CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 4
endoplasmic reticulum 5
vacuole 4
plasma membrane 4
golgi 4
plastid 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
EpiLoc:	mitochondrion
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plastid
Predotar:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
KXG22113

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G55880.1	KXG22113	AT3G44590.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0215800-01	Rice	plastid	86.34	87.11
Zm00001d028220_P001	Maize	plastid	92.07	85.31
TraesCS4D01G244300.1	Wheat	plastid	81.06	83.45
TraesCS4A01G079100.1	Wheat	plastid	80.62	83.37
TraesCS4B01G245100.1	Wheat	plastid	80.84	83.22
HORVU4Hr1G067610.1	Barley	plastid	80.84	77.92
GSMUA_Achr3P26040_001	Banana	endoplasmic reticulum	73.57	77.31
VIT_19s0015g00380.t01	Wine grape	plastid	68.06	73.4
Solyc07g065470.2.1	Tomato	peroxisome, plasma membrane	68.06	73.4
PGSC0003DMT400057393	Potato	plastid	67.84	73.33
AT1G55880.1	Thale cress	endoplasmic reticulum	66.96	72.21
KRH14231	Soybean	mitochondrion	66.96	71.53
Bra038025.1-P	Field mustard	plastid	66.96	70.37
CDY52906	Canola	plastid	66.96	70.37
CDY53756	Canola	endoplasmic reticulum	67.18	69.63
KRH73904	Soybean	cytosol	56.83	61.14
KXG24064	Sorghum	cytosol	25.33	35.38
KXG26295	Sorghum	cytosol	25.77	33.43
EES04772	Sorghum	cytosol	24.89	33.14
KXG19309	Sorghum	cytosol	24.23	31.79
KXG19307	Sorghum	cytosol	23.57	30.48
OQU75833	Sorghum	cytosol	15.42	28.57
EES11801	Sorghum	mitochondrion	24.01	28.24
KXG19308	Sorghum	cytosol	21.59	28.08
EES02674	Sorghum	plastid	24.45	27.61
EES03791	Sorghum	plastid	23.35	27.6
OQU75837	Sorghum	cytosol	14.98	25.66

Protein Annotations

Gene3D:3.40.50.1100	MapMan:35.1	EntrezGene:8056886	UniProt:C5WSS1	EnsemblPlants:EER95270	ProteinID:EER95270
ProteinID:EER95270.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006535	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0030170	ProteinID:KXG39861.1	ProteinID:KXG39862.1	ProteinID:KXG39864.1	InterPro:P-phosphate_BS	PFAM:PF00291
InterPro:PLP-dep	ScanProsite:PS00901	PANTHER:PTHR10314	PANTHER:PTHR10314:SF35	EnsemblPlantsGene:SORBI_3001G455600	SUPFAM:SSF53686
unigene:Sbi.15896	TMHMM:TMhelix	InterPro:Trypto_synt_PLP_dependent	UniParc:UPI0001A833EF	RefSeq:XP_002468272.1	SEG:seg

Description

hypothetical protein

Coordinates

chr1:-:73156559..73159525

Molecular Weight (calculated)

48719.1 Da

IEP (calculated)

8.023

GRAVY (calculated)

-0.193

Length

454 amino acids

Sequence
(BLAST)

001: MAAATAAGAA AAAAAVSLIA CYLLLHKGRP NLPWVPTVGF SRASGRRARR RGLVEAIGNT PLIRINSLSD ATGCEILGKA EFLNPGGSVK DRVAVKIIEE
101: ALESGDLVYG GTVTEGSAGS TAISLATVAP AYGCRCHVVI PDDAAIEKSQ IIEALGATVE RVRPVSITHR DHFVNIARRR ALEANKLAAA QSESNEKQTN
201: GLAHVGSEMM DDKLTAMQRE SNKMQNNDPA LFSTETLHSG KCDVNSDSKG GFFADQFENM ANYRAHYEWT GPEIWKQTKG NLHAFVAAAG TGGTIAGVSR
301: YLKEKNRSIK CFLMDPPGSG LFNKVTRGVM YTKEEAEGKR LKNPFDTITE GIGINRVTKN FMMAELDGAY RGSDREAVEM SRFLLKNDGL FVGSSSAMNC
401: VGAVRVAQDL GPGHTIVTIL CDSGMRHLSK FFNEQYLADH GLTPAATALE FLDK

Best Arabidopsis Sequence Match ( AT1G55880.1 )
(BLAST)

001: MAPVNMTGAV VAAAALLMLT SYSFFFRLSE KKKRKEKLTM RNGLVDAIGN TPLIRINSLS EATGCEILGK CEFLNPGGSV KDRVAVKIIQ EALESGKLFP
101: GGIVTEGSAG STAISLATVA PAYGCKCHVV IPDDAAIEKS QIIEALGASV ERVRPVSITH KDHYVNIARR RADEANELAS KRRLGSETNG IHQEKTNGCT
201: VEEVKEPSLF SDSVTGGFFA DQFENLANYR AHYEGTGPEI WHQTQGNIDA FVAAAGTGGT LAGVSRFLQD KNERVKCFLI DPPGSGLYNK VTRGVMYTRE
301: EAEGRRLKNP FDTITEGIGI NRLTKNFLMA KLDGGFRGTD KEAVEMSRFL LKNDGLFVGS SSAMNCVGAV RVAQTLGPGH TIVTILCDSG MRHLSKFHDP
401: KYLNLYGLSP TAIGLEFLGI K

Arabidopsis Description

At1g55880 [Source:UniProtKB/TrEMBL;Acc:Q6NKY5]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.