Factsheet for Solyc07g065470.2.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plasma membrane

Predictor Summary:

cytosol 3
plastid 4
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome, plasma membrane
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	cytosol
ChloroP:	plastid
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	mitochondrion

peroxisome: 30535734
plasma membrane: 30535734

gfp PMID: 30535734 doi

D Liu, J Lu, H Li, J Wang, Y Pei

College of Life Science, Shanxi University, Taiyuan, 030006, China., College of Life Science, Shanxi University, Taiyuan, 030006, China. peiyanxi@sxu.edu.cn., Scientific Instrument Center, Shanxi University, Taiyuan, 030006, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400057393	Potato	plastid	95.96	96.19
VIT_19s0015g00380.t01	Wine grape	plastid	78.38	78.38
AT1G55880.1	Thale cress	endoplasmic reticulum	74.11	74.11
KRH14231	Soybean	mitochondrion	74.35	73.65
Bra038025.1-P	Field mustard	plastid	74.35	72.45
CDY52906	Canola	plastid	74.35	72.45
GSMUA_Achr3P26040_001	Banana	endoplasmic reticulum	73.4	71.53
CDY53756	Canola	endoplasmic reticulum	74.11	71.23
TraesCS4D01G244300.1	Wheat	plastid	73.4	70.07
TraesCS4B01G245100.1	Wheat	plastid	73.16	69.84
TraesCS4A01G079100.1	Wheat	plastid	72.68	69.7
Os03t0215800-01	Rice	plastid	73.16	68.44
EER95270	Sorghum	plastid	73.4	68.06
HORVU4Hr1G067610.1	Barley	plastid	73.16	65.39
Zm00001d028220_P001	Maize	plastid	72.92	62.65
KRH73904	Soybean	cytosol	62.23	62.09
Solyc01g097950.2.1	Tomato	cytosol	27.32	35.6
Solyc01g097930.2.1	Tomato	cytosol	26.37	34.37
Solyc01g097920.2.1	Tomato	cytosol, plastid	27.79	32.87
Solyc01g097940.1.1	Tomato	plasma membrane	15.2	32.65
Solyc09g082060.2.1	Tomato	cytosol, nucleus, plastid	24.94	32.31
Solyc10g012370.2.1	Tomato	mitochondrion	26.13	31.34
Solyc08g014340.2.1	Tomato	plastid	26.37	28.76
Solyc01g094790.2.1	Tomato	plastid	24.23	28.57
Solyc04g058120.1.1	Tomato	mitochondrion	5.46	25.27

Protein Annotations

MapMan:35.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006535	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0030170	UniProt:K4CHM5	InterPro:P-phosphate_BS	PFAM:PF00291	InterPro:PLP-dep
ScanProsite:PS00901	PANTHER:PTHR10314	PANTHER:PTHR10314:SF35	SUPFAM:SSF53686	EnsemblPlantsGene:Solyc07g065470.2	EnsemblPlants:Solyc07g065470.2.1
InterPro:Trypto_synt_PLP_dependent	UniParc:UPI000276AC57	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr7:+:67208186..67211768

Molecular Weight (calculated)

45026.7 Da

IEP (calculated)

7.776

GRAVY (calculated)

-0.166

Length

421 amino acids

Sequence
(BLAST)

001: MAPVRTAGAI ATLISVAIVS YFLCKTTQQK SSGKKKLQGR RTGLVAAIGN TPLIRINTLS DATGCEILGK AEFLNPGGSV KDRVAVKIIE EALESGALAE
101: GGVVTEGSAG STAISLATVA PAYGCRCHVV IPDDAALEKA QILEALGATV ERVRPVSITH RDHFVNIARR RALEASEITS TTRKESQIDA NDSSQINGHS
201: ISEEKQNMQF SSECKGGFFA DQFENLANFR SHYEGTGPEI WEQTGGNLDA FIAAAGTGGT VAGVSQYLKD KNSNIKCFLI DPPGSGLYNK VTRGVMYTRE
301: EAEGRRLKNP FDTITEGIGI NRLTENFKMA KLDGAFRGTD MEAVEMSRYL LKNDGLFIGS SSAMNCVGAV RVAKALGPGH TIVTILCDSG MRHLSKFHND
401: KYLSEHGLTP SATGLEFLRL S

Best Arabidopsis Sequence Match ( AT1G55880.1 )
(BLAST)

001: MAPVNMTGAV VAAAALLMLT SYSFFFRLSE KKKRKEKLTM RNGLVDAIGN TPLIRINSLS EATGCEILGK CEFLNPGGSV KDRVAVKIIQ EALESGKLFP
101: GGIVTEGSAG STAISLATVA PAYGCKCHVV IPDDAAIEKS QIIEALGASV ERVRPVSITH KDHYVNIARR RADEANELAS KRRLGSETNG IHQEKTNGCT
201: VEEVKEPSLF SDSVTGGFFA DQFENLANYR AHYEGTGPEI WHQTQGNIDA FVAAAGTGGT LAGVSRFLQD KNERVKCFLI DPPGSGLYNK VTRGVMYTRE
301: EAEGRRLKNP FDTITEGIGI NRLTKNFLMA KLDGGFRGTD KEAVEMSRFL LKNDGLFVGS SSAMNCVGAV RVAQTLGPGH TIVTILCDSG MRHLSKFHDP
401: KYLNLYGLSP TAIGLEFLGI K

Arabidopsis Description

At1g55880 [Source:UniProtKB/TrEMBL;Acc:Q6NKY5]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.