Factsheet for Solyc09g082060.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

cytosol 4
plastid 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

cytosol: 30535734
nucleus: 30535734
plasma membrane: 30535734

plastid: 20363867
plastid: 22908117
nucleus: 28394025
extracellular: 29876421

gfp PMID: 30535734 doi

D Liu, J Lu, H Li, J Wang, Y Pei

College of Life Science, Shanxi University, Taiyuan, 030006, China., College of Life Science, Shanxi University, Taiyuan, 030006, China. peiyanxi@sxu.edu.cn., Scientific Instrument Center, Shanxi University, Taiyuan, 030006, China.

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400082113	Potato	cytosol	97.85	97.85
KRH27640	Soybean	cytosol	86.46	86.46
Bra039708.1-P	Field mustard	cytosol	85.23	86.02
CDY68436	Canola	cytosol	85.23	86.02
CDY29778	Canola	cytosol, peroxisome, plastid	80.0	85.81
CDY42795	Canola	cytosol	84.62	85.4
Bra036910.1-P	Field mustard	plastid	83.38	84.95
AT3G22460.1	Thale cress	cytosol	65.23	84.8
AT4G14880.5	Thale cress	cytosol	84.0	84.78
KRG91325	Soybean	cytosol, mitochondrion, nucleus	84.31	84.31
KXG24064	Sorghum	cytosol	84.0	84.0
CDY09039	Canola	cytosol	80.62	83.97
KRH77854	Soybean	cytosol	19.08	83.78
TraesCS5D01G027600.1	Wheat	cytosol, golgi	83.69	83.69
Zm00001d031136_P003	Maize	plasma membrane	83.38	83.38
GSMUA_Achr4P21350_001	Banana	cytosol	83.08	83.08
GSMUA_Achr11P...	Banana	cytosol	82.46	82.72
GSMUA_Achr9P25760_001	Banana	cytosol	82.46	82.72
GSMUA_Achr3P30900_001	Banana	cytosol, unclear	81.85	81.85
HORVU3Hr1G040910.1	Barley	mitochondrion	8.31	79.41
KRH35519	Soybean	cytosol	73.85	78.69
Os12t0625000-01	Rice	plasma membrane	82.77	77.52
TraesCS2B01G316800.1	Wheat	cytosol	73.54	73.09
TraesCS2A01G300600.1	Wheat	cytosol	72.92	72.48
HORVU2Hr1G074630.2	Barley	cytosol	62.46	70.0
TraesCS2D01G298600.2	Wheat	cytosol	73.54	66.76
Solyc01g097950.2.1	Tomato	cytosol	66.15	66.56
HORVU5Hr1G015070.1	Barley	extracellular	13.85	66.18
KXG26295	Sorghum	cytosol	70.77	65.71
Solyc01g097940.1.1	Tomato	plasma membrane	39.38	65.31
Solyc01g097920.2.1	Tomato	cytosol, plastid	71.38	65.17
Zm00001d003717_P001	Maize	cytosol	70.46	65.06
Solyc01g097930.2.1	Tomato	cytosol	63.69	64.09
TraesCS5A01G022200.1	Wheat	plastid	83.38	63.32
Solyc08g014340.2.1	Tomato	plastid	74.46	62.69
HORVU5Hr1G005980.2	Barley	plastid	83.38	62.01
TraesCS5B01G018700.3	Wheat	plastid	83.08	61.5
HORVU5Hr1G082120.2	Barley	mitochondrion, plastid	33.23	57.75
Solyc10g012370.2.1	Tomato	mitochondrion	60.92	56.41
Solyc01g094790.2.1	Tomato	plastid	58.15	52.94
Solyc04g058120.1.1	Tomato	mitochondrion	12.0	42.86
HORVU1Hr1G031220.3	Barley	plastid	45.54	36.36
Solyc07g065470.2.1	Tomato	peroxisome, plasma membrane	32.31	24.94

Protein Annotations

KEGG:00270+2.5.1.47	KEGG:00920+2.5.1.47	Gene3D:3.40.50.1100	MapMan:4.1.4.2.2	InterPro:CysK	InterPro:Cys_synth
GO:GO:0003674	GO:GO:0003824	GO:GO:0004124	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006535	GO:GO:0008150	GO:GO:0008152	GO:GO:0008652
GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0019344	GO:GO:0030170	UniProt:K4CVI4
InterPro:P-phosphate_BS	PFAM:PF00291	InterPro:PLP-dep	ScanProsite:PS00901	PANTHER:PTHR10314	PANTHER:PTHR10314:SF160
SUPFAM:SSF53686	EnsemblPlantsGene:Solyc09g082060.2	EnsemblPlants:Solyc09g082060.2.1	TIGRFAMs:TIGR01136	TIGRFAMs:TIGR01139	InterPro:Trypto_synt_PLP_dependent
UniParc:UPI0001C2EF8B	SEG:seg	:	:	:	:

Description

Cysteine synthase [Source:UniProtKB/TrEMBL;Acc:K4CVI4]

Coordinates

chr9:+:67901112..67905468

Molecular Weight (calculated)

34244.6 Da

IEP (calculated)

5.964

GRAVY (calculated)

0.017

Length

325 amino acids

Sequence
(BLAST)

001: MAGEKTGIAK DVTELIGNTP LVYLNNVVDG CVARVAAKLE SMEPCSSVKD RIGYSMITDA EEKGLIKPGE SVLIEPTSGN TGVGLAFMAA AKGYKLIITM
101: PSSMSLERRI ILRAFGAELV LTDPAKGMKG AISKAEEIRG KTPNSYILQQ FENPANPKIH YETTGPEIWK GSNGKVDALV SGIGTGGTIT GSGKYLREQN
201: PNIKLYGVEP VESAILSGGK PGPHKIQGIG AGFVPGVLEV NLIDDVVQVS SDESIEMAKL LALKEGLLVG ISSGAAAAAA IKVAKRPENA GKLIVVVFPS
301: FGERYLSSVL FETVRREAEN MTVEP

Best Arabidopsis Sequence Match ( AT4G14880.5 )
(BLAST)

001: MASRIAKDVT ELIGNTPLVY LNNVAEGCVG RVAAKLEMME PCSSVKDRIG FSMISDAEKK GLIKPGESVL IEPTSGNTGV GLAFTAAAKG YKLIITMPAS
101: MSTERRIILL AFGVELVLTD PAKGMKGAIA KAEEILAKTP NGYMLQQFEN PANPKIHYET TGPEIWKGTG GKIDGFVSGI GTGGTITGAG KYLKEQNANV
201: KLYGVEPVES AILSGGKPGP HKIQGIGAGF IPSVLNVDLI DEVVQVSSDE SIDMARQLAL KEGLLVGISS GAAAAAAIKL AQRPENAGKL FVAIFPSFGE
301: RYLSTVLFDA TRKEAEAMTF EA

Arabidopsis Description

OASA1Cysteine synthase 1 [Source:UniProtKB/Swiss-Prot;Acc:P47998]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.