Factsheet for Os12t0625000-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

mitochondrion 5
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	mitochondrion, plastid
BaCelLo:	mitochondrion
EpiLoc:	plastid
MultiLoc:	mitochondrion
Plant-mPloc:	mitochondrion, plastid
PProwler:	mitochondrion
YLoc:	mitochondrion

extracellular: 23159799
nucleus: 24133045
plasma membrane: 27800704
plasma membrane: 28056797

msms PMID: 24133045 doi

DK Jaiswal, D Ray, MK Choudhary, P Subba, A Kumar, J Verma, R Kumar, A Datta, S Chakraborty, N Chakraborty

National Institute of Plant Genome Research, New Delhi, India.

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 28056797 doi

N Yang, T Wang

Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.

msms PMID: 23159799 doi

SG Kim, Y Wang, KH Lee, ZY Park, J Park, J Wu, SJ Kwon, YH Lee, GK Agrawal, R Rakwal, ST Kim, KY Kang

Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University, Jinju, 660-701, South Korea.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0805500-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G28020.1	Os02t0805500-01	AT5G54390.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G040910.1	Barley	mitochondrion	9.8	100.0
Zm00001d031136_P003	Maize	plasma membrane	84.73	90.46
TraesCS5D01G027600.1	Wheat	cytosol, golgi	84.44	90.15
KXG24064	Sorghum	cytosol	83.86	89.54
GSMUA_Achr3P30900_001	Banana	cytosol, unclear	79.83	85.23
Solyc09g082060.2.1	Tomato	cytosol, nucleus, plastid	77.52	82.77
PGSC0003DMT400082113	Potato	cytosol	76.66	81.85
KRH77854	Soybean	cytosol	17.29	81.08
KRH68699	Soybean	cytosol	75.79	80.92
KRG96937	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	75.5	80.62
AT4G14880.5	Thale cress	cytosol	74.64	80.43
Bra039708.1-P	Field mustard	cytosol	74.35	80.12
CDY68436	Canola	cytosol	74.35	80.12
KRH27640	Soybean	cytosol	74.93	80.0
CDY42795	Canola	cytosol	73.49	79.19
AT3G22460.1	Thale cress	cytosol	56.77	78.8
Bra036910.1-P	Field mustard	plastid	72.33	78.68
CDY29778	Canola	cytosol, peroxisome, plastid	68.59	78.55
HORVU5Hr1G015070.1	Barley	extracellular	15.27	77.94
CDY09039	Canola	cytosol	70.03	77.88
KRG91325	Soybean	cytosol, mitochondrion, nucleus	72.62	77.54
KRH13764	Soybean	cytosol	68.3	73.83
KRH35519	Soybean	cytosol	64.84	73.77
VIT_14s0030g01520.t01	Wine grape	cytosol	68.59	73.68
KRH43690	Soybean	cytosol	47.84	71.24
TraesCS5A01G022200.1	Wheat	plastid	87.61	71.03
KRG92757	Soybean	cytosol	65.99	70.9
KRH34052	Soybean	cytosol	65.13	69.75
TraesCS5B01G018700.3	Wheat	plastid	88.18	69.7
VIT_14s0030g01550.t01	Wine grape	cytosol	68.59	69.59
AT5G28020.1	Thale cress	cytosol	63.69	68.42
HORVU5Hr1G005980.2	Barley	plastid	86.17	68.42
CDY41911	Canola	cytosol	62.54	67.6
CDY50768	Canola	cytosol	62.25	67.29
CDY69239	Canola	cytosol	62.25	67.29
KRH34037	Soybean	cytosol	62.54	67.18
CDY52498	Canola	cytosol	61.96	66.56
CDY00007	Canola	cytosol	61.96	66.56
AT3G04940.1	Thale cress	cytosol	61.96	66.36
CDX74160	Canola	cytosol	61.38	66.36
Solyc01g097950.2.1	Tomato	cytosol	61.67	66.25
CDY19703	Canola	cytosol	61.67	66.25
CDY05586	Canola	cytosol	61.38	65.94
Bra009985.1-P	Field mustard	cytosol	52.45	65.7
Bra036115.1-P	Field mustard	cytosol	60.81	65.33
AT5G28030.2	Thale cress	cytosol	60.52	65.02
CDX86187	Canola	cytosol	56.77	64.8
CDY41913	Canola	cytosol	56.77	64.8
Solyc01g097920.2.1	Tomato	cytosol, plastid	65.99	64.33
Solyc01g097940.1.1	Tomato	plasma membrane	36.31	64.29
HORVU5Hr1G082120.2	Barley	mitochondrion, plastid	34.58	64.17
CDX80680	Canola	cytosol	56.2	64.14
Solyc01g097930.2.1	Tomato	cytosol	58.5	62.85
Bra036114.1-P	Field mustard	cytosol	59.94	60.82
VIT_14s0030g01540.t01	Wine grape	cytosol, mitochondrion, plastid	68.3	60.77
CDY19702	Canola	mitochondrion	61.38	60.68
CDY00008	Canola	mitochondrion	61.38	60.68
Os01t0978100-01	Rice	plastid	67.15	59.14
KRG92761	Soybean	cytosol	52.16	54.68
Bra001131.1-P	Field mustard	mitochondrion	62.25	54.0
VIT_14s0030g01490.t01	Wine grape	cytosol	68.3	53.99
Os04t0165700-01	Rice	mitochondrion	57.06	52.52
Os06t0149700-00	Rice	cytosol	49.86	51.03
Os06t0564700-01	Rice	cytosol	49.28	50.0
Os06t0149900-01	Rice	cytosol	49.86	49.86
Bra020605.1-P	Field mustard	mitochondrion	61.38	49.08
Os01t0814800-01	Rice	plastid	55.04	48.72
CDY41915	Canola	cytosol	8.65	48.39
Os06t0564500-01	Rice	cytosol	48.99	47.62
Bra040417.1-P	Field mustard	cytosol	39.48	43.91
Os06t0564400-00	Rice	cytosol	31.41	42.41
Os02t0222100-01	Rice	cytosol	13.26	41.07
HORVU1Hr1G031220.3	Barley	plastid	46.97	40.05
VIT_14s0030g01560.t01	Wine grape	endoplasmic reticulum, extracellular	80.12	39.66
Os03t0215800-01	Rice	plastid	31.99	24.67

Protein Annotations

KEGG:00270+2.5.1.47	KEGG:00920+2.5.1.47	Gene3D:3.40.50.1100	MapMan:4.1.4.2.2	UniProt:A0A0P0YDB6	ProteinID:BAT18174.1
InterPro:CysK	InterPro:Cys_synth	GO:GO:0003674	GO:GO:0003824	GO:GO:0004124	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006535	GO:GO:0008150
GO:GO:0008152	GO:GO:0008652	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0019344
GO:GO:0030170	EnsemblPlantsGene:Os12g0625000	EnsemblPlants:Os12t0625000-01	InterPro:P-phosphate_BS	PFAM:PF00291	InterPro:PLP-dep
ScanProsite:PS00901	PANTHER:PTHR10314	PANTHER:PTHR10314:SF160	SUPFAM:SSF53686	TIGRFAMs:TIGR01136	TIGRFAMs:TIGR01139
InterPro:Trypto_synt_PLP_dependent	UniParc:UPI00039386B1	SEG:seg	:	:	:

Description

CYSTEINE SYNTHASE 1Similar to Cysteine synthase. (Os12t0625000-01)

Coordinates

chr12:-:26698650..26703087

Molecular Weight (calculated)

36775.6 Da

IEP (calculated)

6.309

GRAVY (calculated)

0.011

Length

347 amino acids

Sequence
(BLAST)

001: NSTSRHFPRR SKDCCCFAVR SIPDGIMGET IAKDVTELIG NTPLVYLNRV TDGCVGRVAA KLESMEPCSS VKDRIGYSMI TDAEEKGLIT PGKSVLIEPT
101: SGNTGIGLAF MAAAKGYRLV LTMPASMSME RRIILKAFGA ELILTDPLLG MKGAVQKAEE LAAKTNNSFI LQQFENPANP KIHYETTGPE IWKGTGGKVD
201: GLVSGIGTGG TITGAGRYLR EQNPDIKIYG VEPVESAVLS GGKPGPHKIQ GIGAGFVPGV LDVDLINETV QVSSDEAIEM AKALALKEGL LVGISSGAAA
301: AAAVRLAQRP ENEGKLFVVV FPSFGERYLS SVLFQSIKKE AENMVVE

Best Arabidopsis Sequence Match ( AT4G14880.5 )
(BLAST)

001: MASRIAKDVT ELIGNTPLVY LNNVAEGCVG RVAAKLEMME PCSSVKDRIG FSMISDAEKK GLIKPGESVL IEPTSGNTGV GLAFTAAAKG YKLIITMPAS
101: MSTERRIILL AFGVELVLTD PAKGMKGAIA KAEEILAKTP NGYMLQQFEN PANPKIHYET TGPEIWKGTG GKIDGFVSGI GTGGTITGAG KYLKEQNANV
201: KLYGVEPVES AILSGGKPGP HKIQGIGAGF IPSVLNVDLI DEVVQVSSDE SIDMARQLAL KEGLLVGISS GAAAAAAIKL AQRPENAGKL FVAIFPSFGE
301: RYLSTVLFDA TRKEAEAMTF EA

Arabidopsis Description

OASA1Cysteine synthase 1 [Source:UniProtKB/Swiss-Prot;Acc:P47998]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.