CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, nucleus
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 21132161
mitochondrion: 27780359

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH35519	Soybean	cytosol	85.85	91.48
KRH27640	Soybean	cytosol	90.15	90.15
KRH77854	Soybean	cytosol	20.31	89.19
KRG96937	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	87.08	87.08
KRH68699	Soybean	cytosol	86.46	86.46
Solyc09g082060.2.1	Tomato	cytosol, nucleus, plastid	84.31	84.31
PGSC0003DMT400082113	Potato	cytosol	83.69	83.69
GSMUA_Achr9P25760_001	Banana	cytosol	81.23	81.48
AT3G22460.1	Thale cress	cytosol	62.46	81.2
Bra039708.1-P	Field mustard	cytosol	80.0	80.75
CDY42795	Canola	cytosol	80.0	80.75
CDY68436	Canola	cytosol	80.0	80.75
GSMUA_Achr11P...	Banana	cytosol	80.31	80.56
CDY29778	Canola	cytosol, peroxisome, plastid	75.08	80.53
AT4G14880.5	Thale cress	cytosol	79.69	80.43
GSMUA_Achr4P21350_001	Banana	cytosol	80.31	80.31
Bra036910.1-P	Field mustard	plastid	78.77	80.25
KXG24064	Sorghum	cytosol	79.38	79.38
Zm00001d031136_P003	Maize	plasma membrane	79.08	79.08
CDY09039	Canola	cytosol	75.69	78.85
GSMUA_Achr3P30900_001	Banana	cytosol, unclear	78.77	78.77
TraesCS5D01G027600.1	Wheat	cytosol, golgi	78.15	78.15
KRH13764	Soybean	cytosol	74.15	75.08
HORVU3Hr1G040910.1	Barley	mitochondrion	7.69	73.53
KRG92757	Soybean	cytosol	72.31	72.76
Os12t0625000-01	Rice	plasma membrane	77.54	72.62
TraesCS2B01G316800.1	Wheat	cytosol	72.0	71.56
KRH34052	Soybean	cytosol	71.08	71.3
KRH34037	Soybean	cytosol	70.15	70.59
TraesCS2A01G300600.1	Wheat	cytosol	70.77	70.34
HORVU2Hr1G074630.2	Barley	cytosol	62.15	69.66
KRH43690	Soybean	cytosol	49.85	69.53
TraesCS2D01G298600.2	Wheat	cytosol	72.31	65.64
KXG26295	Sorghum	cytosol	69.85	64.86
Zm00001d003717_P001	Maize	cytosol	70.15	64.77
KRH74905	Soybean	cytosol	15.38	62.5
HORVU5Hr1G015070.1	Barley	extracellular	12.92	61.76
KRH50190	Soybean	nucleus, plastid	73.85	61.7
KRH71273	Soybean	nucleus, plastid	73.54	60.66
TraesCS5A01G022200.1	Wheat	plastid	77.23	58.64
HORVU5Hr1G005980.2	Barley	plastid	77.85	57.89
TraesCS5B01G018700.3	Wheat	plastid	77.85	57.63
KRG92761	Soybean	cytosol	57.85	56.8
HORVU5Hr1G082120.2	Barley	mitochondrion, plastid	32.31	56.15
KRG94935	Soybean	nucleus	60.92	53.37
KRH00797	Soybean	mitochondrion	60.62	52.96
KRH64961	Soybean	nucleus, plastid	60.92	52.94
KRH40428	Soybean	mitochondrion	60.62	52.81
HORVU1Hr1G031220.3	Barley	plastid	43.69	34.89
KRH14231	Soybean	mitochondrion	35.38	27.06
KRH73904	Soybean	cytosol	29.23	22.51

Protein Annotations

KEGG:00270+2.5.1.47	KEGG:00920+2.5.1.47	EntrezGene:100101866	Gene3D:3.40.50.1100	MapMan:4.1.4.2.2	UniProt:A0A0R0EBB0
EMBL:ACUP02012676	InterPro:CysK	InterPro:Cys_synth	EnsemblPlantsGene:GLYMA_20G148100	GO:GO:0003674	GO:GO:0003824
GO:GO:0004124	GO:GO:0006535	GO:GO:0008150	GO:GO:0008152	GO:GO:0008652	GO:GO:0009058
GO:GO:0009987	GO:GO:0016740	GO:GO:0019344	ProteinID:KRG91324.1	EnsemblPlants:KRG91325	ProteinID:KRG91325
ProteinID:KRG91325.1	InterPro:P-phosphate_BS	PFAM:PF00291	InterPro:PLP-dep	ScanProsite:PS00901	PANTHER:PTHR10314
PANTHER:PTHR10314:SF101	MetaCyc:PWY-6936	SUPFAM:SSF53686	TIGRFAMs:TIGR01136	TIGRFAMs:TIGR01139	InterPro:Trypto_synt_PLP_dependent
UniParc:UPI0006EDF1B9	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr20:-:38643295..38648235

Molecular Weight (calculated)

34209.6 Da

IEP (calculated)

5.965

GRAVY (calculated)

0.111

Length

325 amino acids

Sequence
(BLAST)

001: MAVEKSGIAK DVTELIGKTP IVYLNKIADG SVARVAAKLE LMEPCSSVKD RIAYSMIADA EKKGLITPGQ SILIEPTSGN TGIGLAFLAA AKGYKLIITM
101: PASMSLERRT ILLSFGAELV LTDPAKGMKG AVQKAEEILD KTPNAYILQQ FENPANPKVH YETTGPEIWE GTRGKVDALV SGIGTGGTIT GAGKFLKEKN
201: PNIKLYGVEP VESPVLSGGK PGPHKIQGIG AGFVPGVLEV SLVDEVVQIS SDEAIETAKL LALQEGLFVG ISSGAAAAAA IKIAKRPENA GKLIVVIFPS
301: FGERYLSSVL FESVRREAES LTFES

Best Arabidopsis Sequence Match ( AT4G14880.1 )
(BLAST)

001: MASRIAKDVT ELIGNTPLVY LNNVAEGCVG RVAAKLEMME PCSSVKDRIG FSMISDAEKK GLIKPGESVL IEPTSGNTGV GLAFTAAAKG YKLIITMPAS
101: MSTERRIILL AFGVELVLTD PAKGMKGAIA KAEEILAKTP NGYMLQQFEN PANPKIHYET TGPEIWKGTG GKIDGFVSGI GTGGTITGAG KYLKEQNANV
201: KLYGVEPVES AILSGGKPGP HKIQGIGAGF IPSVLNVDLI DEVVQVSSDE SIDMARQLAL KEGLLVGISS GAAAAAAIKL AQRPENAGKL FVAIFPSFGE
301: RYLSTVLFDA TRKEAEAMTF EA

Arabidopsis Description

OASA1Cysteine synthase 1 [Source:UniProtKB/Swiss-Prot;Acc:P47998]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.