CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 5
extracellular 3
endoplasmic reticulum 2
vacuole 3
plasma membrane 2
golgi 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	mitochondrion, plastid
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	vacuole

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG93305
KRH56614

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G03630.1	KRG93305	AT3G27960.1	21798944
AT3G03630.1	KRH56614	AT3G27960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH64961	Soybean	nucleus, plastid	93.26	92.51
KRH77854	Soybean	cytosol	14.02	70.27
VIT_08s0056g00820.t01	Wine grape	plastid	72.51	68.97
CDY29946	Canola	plastid	69.81	66.07
Bra036448.1-P	Field mustard	plastid	69.54	65.65
CDY21176	Canola	plastid	69.54	65.65
TraesCS3D01G332100.1	Wheat	plastid	65.5	64.12
TraesCS3A01G338600.3	Wheat	plastid	65.23	63.85
TraesCS3B01G370200.3	Wheat	plastid	64.42	63.4
AT3G03630.1	Thale cress	plastid	69.0	63.37
HORVU3Hr1G079890.1	Barley	plastid	65.77	62.56
KRH13764	Soybean	cytosol	53.64	61.99
Os01t0814800-01	Rice	plastid	65.5	61.99
EES03791	Sorghum	plastid	64.15	61.98
KRH27640	Soybean	cytosol	53.91	61.54
KRG96937	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	53.64	61.23
KRH34037	Soybean	cytosol	53.1	60.99
KRG91325	Soybean	cytosol, mitochondrion, nucleus	53.37	60.92
KRH68699	Soybean	cytosol	53.37	60.92
KRG92757	Soybean	cytosol	50.67	58.2
GSMUA_Achr8P00260_001	Banana	mitochondrion	68.46	57.99
KRH34052	Soybean	cytosol	50.4	57.72
KRH43690	Soybean	cytosol	35.85	57.08
KRH35519	Soybean	cytosol	46.9	57.05
KRH74905	Soybean	cytosol	12.13	56.25
KRH50190	Soybean	nucleus, plastid	58.49	55.78
KRH71273	Soybean	nucleus, plastid	57.68	54.31
KRG92761	Soybean	cytosol	45.01	50.45
KRH40428	Soybean	mitochondrion	49.06	48.79
KRH00797	Soybean	mitochondrion	48.79	48.66
Zm00001d043101_P001	Maize	plastid	23.99	45.88
KRH14231	Soybean	mitochondrion	29.38	25.65
KRH73904	Soybean	cytosol	23.18	20.38

Protein Annotations

KEGG:00270+2.5.1.47	KEGG:00920+2.5.1.47	EntrezGene:100816974	Gene3D:3.40.50.1100	MapMan:50.2.5	EMBL:ACUP02012064
InterPro:CysK	InterPro:Cys_synth	EnsemblPlantsGene:GLYMA_19G119200	GO:GO:0003674	GO:GO:0003824	GO:GO:0004124
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006535
GO:GO:0008150	GO:GO:0008152	GO:GO:0008652	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740
GO:GO:0019344	GO:GO:0030170	UniProt:K7MXY9	EnsemblPlants:KRG94935	ProteinID:KRG94935	ProteinID:KRG94935.1
InterPro:P-phosphate_BS	PFAM:PF00291	InterPro:PLP-dep	ScanProsite:PS00901	PANTHER:PTHR10314	PANTHER:PTHR10314:SF90
MetaCyc:PWY-6936	SUPFAM:SSF53686	SignalP:SignalP-noTM	TIGRFAMs:TIGR01136	TIGRFAMs:TIGR01139	InterPro:Trypto_synt_PLP_dependent
UniParc:UPI000233E31F	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr19:+:37677361..37682982

Molecular Weight (calculated)

40066.8 Da

IEP (calculated)

8.186

GRAVY (calculated)

0.100

Length

371 amino acids

Sequence
(BLAST)

001: MRMALSSFSL PCLCYCTSTL VPFNLTRLQL VSLKPYTRSQ SQHTAAKAKV SSAPLVYSTR QGFDTVNIAE DVTQLIGNTP MVYLNKVTEG CVANIAAKLE
101: SMEPCRSVKD RIGYSMLSDA EEIGAISPGK TILVEPTTGN TGLGIAFVAA TKGYKLIVTM PASINVERRI LLRAFGAEVV LTDAEKGLKG AVDKAEEIVR
201: NTPNAYMFRQ FDNMTNTKIH FETTGPEIWE DTMGNVDVLV AGIGTGGTVT GTGRYLKMMN KNIKVVGVEP ADRSVVSGDS PGFMPSILDI KLLDEVIKVT
301: NVEAVEMARR LALKEGLLVG ISSGAAAAAA INLARRPEHS GKLIVVIFPS FGERYISTAL FHSIYEEVQK M

Best Arabidopsis Sequence Match ( AT3G03630.1 )
(BLAST)

001: MAFASPSLRL LPQSPLGRIT SKLHRFSTAK LSLFSFHHDS SSSLAVRTPV SSFVVGAISG KSSTGTKSKS KTKRKPPPPP PVTTVAEEQH IAESETVNIA
101: EDVTQLIGST PMVYLNRVTD GCLADIAAKL ESMEPCRSVK DRIGLSMINE AENSGAITPR KTVLVEPTTG NTGLGIAFVA AAKGYKLIVT MPASINIERR
201: MLLRALGAEI VLTNPEKGLK GAVDKAKEIV LKTKNAYMFQ QFDNTANTKI HFETTGPEIW EDTMGNVDIF VAGIGTGGTV TGTGGFLKMM NKDIKVVGVE
301: PSERSVISGD NPGYLPGILD VKLLDEVFKV SNGEAIEMAR RLALEEGLLV GISSGAAAVA AVSLAKRAEN AGKLITVLFP SHGERYITTA LFSSINREVQ
401: EMRY

Arabidopsis Description

CS26Probable S-sulfocysteine synthase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O22682]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.