CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 6
plastid 6

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
mitochondrion: 27780359

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH00797	Soybean	mitochondrion	97.32	97.58
VIT_15s0046g02300.t01	Wine grape	mitochondrion	86.06	86.52
PGSC0003DMT400000156	Potato	mitochondrion	79.36	85.3
PGSC0003DMT400016646	Potato	mitochondrion	80.16	85.19
Solyc10g012370.2.1	Tomato	mitochondrion	80.16	85.19
KRH74905	Soybean	cytosol	18.23	85.0
VIT_04s0044g00250.t01	Wine grape	mitochondrion	80.43	83.57
Solyc01g094790.2.1	Tomato	plastid	78.82	82.35
Bra014436.1-P	Field mustard	mitochondrion	77.75	78.8
CDX89116	Canola	mitochondrion	77.75	78.8
CDY43932	Canola	mitochondrion	77.48	78.53
AT3G61440.1	Thale cress	mitochondrion	77.21	78.26
Bra007604.1-P	Field mustard	mitochondrion	76.94	77.99
CDX71737	Canola	mitochondrion	76.68	77.72
PGSC0003DMT400034224	Potato	cytosol	15.01	76.71
PGSC0003DMT400021594	Potato	cytosol	20.38	75.25
GSMUA_Achr5P19480_001	Banana	mitochondrion	72.39	75.21
CDY48919	Canola	endoplasmic reticulum	61.93	73.33
PGSC0003DMT400064098	Potato	cytosol	15.28	73.08
Os04t0165700-01	Rice	mitochondrion	71.58	70.82
TraesCS5B01G300800.1	Wheat	mitochondrion	71.05	70.11
Zm00001d004413_P002	Maize	mitochondrion	71.58	69.9
TraesCS5A01G300400.1	Wheat	mitochondrion	70.51	69.21
EES11801	Sorghum	mitochondrion	71.58	69.17
HORVU7Hr1G023500.1	Barley	cytosol	19.3	67.92
PGSC0003DMT400040030	Potato	cytosol	19.3	67.29
PGSC0003DMT400012263	Potato	cytosol	19.03	66.36
Solyc04g058120.1.1	Tomato	mitochondrion	15.28	62.64
KRG96937	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	54.42	62.46
KRH77854	Soybean	cytosol	12.33	62.16
KRH27640	Soybean	cytosol	53.89	61.85
KRH68699	Soybean	cytosol	53.08	60.92
KRG91325	Soybean	cytosol, mitochondrion, nucleus	52.81	60.62
KRH13764	Soybean	cytosol	51.47	59.81
KRH35519	Soybean	cytosol	47.72	58.36
HORVU2Hr1G000280.3	Barley	golgi, peroxisome, plastid	70.24	57.46
KRH34037	Soybean	cytosol	49.6	57.28
KRG92757	Soybean	cytosol	49.6	57.28
KRH34052	Soybean	cytosol	49.33	56.79
KRH43690	Soybean	cytosol	34.05	54.51
KRH50190	Soybean	nucleus, plastid	54.16	51.93
KRH71273	Soybean	nucleus, plastid	53.62	50.76
KRH64961	Soybean	nucleus, plastid	49.87	49.73
KRG94935	Soybean	nucleus	48.79	49.06
KRG92761	Soybean	cytosol	42.36	47.73
PGSC0003DMT400080490	Potato	cytosol, mitochondrion, nucleus, plastid	16.89	47.73
CDY68838	Canola	mitochondrion	16.09	44.12
KRH14231	Soybean	mitochondrion	29.22	25.65
KRH73904	Soybean	cytosol	24.13	21.33

Protein Annotations

KEGG:00270+2.5.1.47	KEGG:00460+4.4.1.9	KEGG:00920+2.5.1.47	EntrezGene:100806420	Gene3D:3.40.50.1100	PDB:3VBE
PDB:3VC3	MapMan:50.2.5	EMBL:ACUP02006037	InterPro:CAS	InterPro:CysK	InterPro:Cys_synth
EnsemblPlantsGene:GLYMA_09G258000	GO:GO:0003674	GO:GO:0003824	GO:GO:0004124	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006535	GO:GO:0008150
GO:GO:0008152	GO:GO:0008652	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0019344
GO:GO:0019499	GO:GO:0030170	GO:GO:0050017	UniProt:I1L6I6	EnsemblPlants:KRH40428	ProteinID:KRH40428
ProteinID:KRH40428.1	InterPro:P-phosphate_BS	PFAM:PF00291	InterPro:PLP-dep	ScanProsite:PS00901	PANTHER:PTHR10314
PANTHER:PTHR10314:SF80	MetaCyc:PWY-6936	SUPFAM:SSF53686	TIGRFAMs:TIGR01136	TIGRFAMs:TIGR01139	InterPro:Trypto_synt_PLP_dependent
UniParc:UPI0001BA662D	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:47690803..47694613

Molecular Weight (calculated)

40160.7 Da

IEP (calculated)

7.691

GRAVY (calculated)

-0.136

Length

373 amino acids

Sequence
(BLAST)

001: MASLMSTILK QRSCSSSSHA GRLLFSTTTA AIVDSPSLAQ RIRDLPKDLP GTNIKKHVSQ LIGRTPLVYL NKVTEGCGAY VAVKQEMMQP TASIKDRPAY
101: AMITDAEEKN LITPGKTTLI EPTSGNMGIS MAFMAAMKGY KMVLTMPSYT SLERRVTMRA FGAELILTDP AKGMGGTVKK AYELLENTPN AHMLQQFSNP
201: ANTQVHFETT GPEIWEDTNG QVDIFVMGIG SGGTVSGVGQ YLKSKNPNVK IYGVEPSESN VLNGGKPGPH HITGNGVGFK PDILDLDVME KVLEVSSEDA
301: VNMARVLALK EGLMVGISSG ANTVAALRLA QLPENKGKLI VTVHPSFGER YLSSVLFQEL RQEAENMQPV AVD

Best Arabidopsis Sequence Match ( AT3G61440.1 )
(BLAST)

001: MASVSRRLLR RETIPCFSHT VRKLFSTVGS PSFAQRLRDL PKDFPSTNAK RDASLLIGKT PLVFLNKVTE GCEAYVAAKQ EHFQPTCSIK DRPAIAMIAD
101: AEKKKLIIPG KTTLIEPTSG NMGISLAFMA AMKGYRIIMT MPSYTSLERR VTMRSFGAEL VLTDPAKGMG GTVKKAYDLL DSTPDAFMCQ QFANPANTQI
201: HFDTTGPEIW EDTLGNVDIF VMGIGSGGTV SGVGRYLKSK NPNVKIYGVE PAESNILNGG KPGPHAITGN GVGFKPEILD MDVMESVLEV SSEDAIKMAR
301: ELALKEGLMV GISSGANTVA AIRLAKMPEN KGKLIVTIHA SFGERYLSSV LFDELRKEAE EMKPVSVD

Arabidopsis Description

CYSC1Bifunctional L-3-cyanoalanine synthase/cysteine synthase C1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9S757]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.