Factsheet for PGSC0003DMT400040030

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 2
mitochondrion 4
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	cytosol, mitochondrion, plastid
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400034224	Potato	cytosol	60.75	89.04
PGSC0003DMT400012263	Potato	cytosol	87.85	87.85
Solyc04g058120.1.1	Tomato	mitochondrion	45.79	53.85
KRH74905	Soybean	cytosol	28.04	37.5
HORVU7Hr1G023500.1	Barley	cytosol	29.91	30.19
PGSC0003DMT400064098	Potato	cytosol	21.5	29.49
PGSC0003DMT400000156	Potato	mitochondrion	77.57	23.92
CDY48919	Canola	endoplasmic reticulum	70.09	23.81
PGSC0003DMT400016646	Potato	mitochondrion	70.09	21.37
Bra014436.1-P	Field mustard	mitochondrion	71.03	20.65
CDX89116	Canola	mitochondrion	71.03	20.65
CDY43932	Canola	mitochondrion	71.03	20.65
VIT_15s0046g02300.t01	Wine grape	mitochondrion	71.03	20.49
Bra007604.1-P	Field mustard	mitochondrion	70.09	20.38
CDX71737	Canola	mitochondrion	70.09	20.38
AT3G61440.1	Thale cress	mitochondrion	69.16	20.11
KRH00797	Soybean	mitochondrion	68.22	19.62
KRH40428	Soybean	mitochondrion	67.29	19.3
GSMUA_Achr5P19480_001	Banana	mitochondrion	63.55	18.94
VIT_04s0044g00250.t01	Wine grape	mitochondrion	61.68	18.38
PGSC0003DMT400021594	Potato	cytosol	16.82	17.82
Zm00001d004413_P002	Maize	mitochondrion	61.68	17.28
Os04t0165700-01	Rice	mitochondrion	60.75	17.24
TraesCS5B01G300800.1	Wheat	mitochondrion	60.75	17.2
TraesCS5A01G300400.1	Wheat	mitochondrion	60.75	17.11
EES11801	Sorghum	mitochondrion	60.75	16.84
PGSC0003DMT400082113	Potato	cytosol	47.66	15.69
PGSC0003DMT400059624	Potato	cytosol, plastid	53.27	14.77
HORVU2Hr1G000280.3	Barley	golgi, peroxisome, plastid	59.81	14.04
PGSC0003DMT400080490	Potato	cytosol, mitochondrion, nucleus, plastid	16.82	13.64
PGSC0003DMT400057393	Potato	plastid	27.1	6.9
CDY68838	Canola	mitochondrion	0.0	0.0

Protein Annotations

KEGG:00460+4.4.1.9	Gene3D:3.40.50.1100	MapMan:35.1	InterPro:CAS	GO:GO:0003674	GO:GO:0003824
GO:GO:0004124	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0019344
GO:GO:0019499	GO:GO:0050017	UniProt:M1B970	EnsemblPlantsGene:PGSC0003DMG400015485	PGSC:PGSC0003DMG400015485	EnsemblPlants:PGSC0003DMT400040030
PANTHER:PTHR10314	PANTHER:PTHR10314:SF80	SUPFAM:SSF53686	InterPro:Trypto_synt_PLP_dependent	UniParc:UPI000296EB71	:

Description

Cysteine synthase [Source:PGSC_GENE;Acc:PGSC0003DMG400015485]

Coordinates

chr2:-:20931377..20931949

Molecular Weight (calculated)

12113.3 Da

IEP (calculated)

4.840

GRAVY (calculated)

-0.547

Length

107 amino acids

Sequence
(BLAST)

001: MTGIVKKAYE LLESTPNAFM LQQFYNPANT QDHFDTTCPE IWEETLGNID LTLCLYGFEP TESNILNGGK PGHHQITGKG VGFKPDILGM DLMEEHRHWK
101: SSEGFPR

Best Arabidopsis Sequence Match ( AT3G61440.4 )
(BLAST)

001: MASVSRRLLR RETIPCFSHT VRKLFSTVGS PSFAQRLRDL PKDFPSTNAK RDASLLIGKT PLVFLNKVTE GCEAYVAAKQ EHFQPTCSIK DRPAIAMIAD
101: AEKKKLIIPG KTTLIEPTSG NMGISLAFMA AMKGYRIIMT MPSYTSLERR VTMRSFGAEL VLTDPAKGMG GTVKKAYDLL DSTPDAFMCQ QFANPANTQI
201: HFDTTGPEIW EDTLGNVDIF VMGIGSGGTV SGVGRYLKSK NPNVKIYGVE PAESNILNGG KPGPHAITGN GVGFKPEILD MDVMESVLEV SSEDAIKMAR
301: ELALKEGLMV SVLMMYRDSL FVCFLVVSMD NNL

Arabidopsis Description

CYSC1Bifunctional L-3-cyanoalanine synthase/cysteine synthase C1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9S757]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.