Factsheet for VIT_15s0046g02300.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 5
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_04s0044g00250.t01	Wine grape	mitochondrion	91.37	94.43
PGSC0003DMT400000156	Potato	mitochondrion	81.67	87.32
PGSC0003DMT400016646	Potato	mitochondrion	82.21	86.89
Solyc10g012370.2.1	Tomato	mitochondrion	82.21	86.89
KRH00797	Soybean	mitochondrion	86.52	86.29
KRH40428	Soybean	mitochondrion	86.52	86.06
Solyc01g094790.2.1	Tomato	plastid	80.86	84.03
PGSC0003DMT400034224	Potato	cytosol	15.9	80.82
AT3G61440.1	Thale cress	mitochondrion	77.9	78.53
KRH74905	Soybean	cytosol	16.71	77.5
PGSC0003DMT400064098	Potato	cytosol	16.17	76.92
CDX89116	Canola	mitochondrion	76.28	76.9
Bra014436.1-P	Field mustard	mitochondrion	76.28	76.9
CDY43932	Canola	mitochondrion	76.01	76.63
CDX71737	Canola	mitochondrion	76.01	76.63
Bra007604.1-P	Field mustard	mitochondrion	76.01	76.63
PGSC0003DMT400021594	Potato	cytosol	20.49	75.25
GSMUA_Achr5P19480_001	Banana	mitochondrion	71.97	74.37
CDY48919	Canola	endoplasmic reticulum	62.26	73.33
PGSC0003DMT400012263	Potato	cytosol	20.49	71.03
PGSC0003DMT400040030	Potato	cytosol	20.49	71.03
Os04t0165700-01	Rice	mitochondrion	70.08	68.97
TraesCS5B01G300800.1	Wheat	mitochondrion	70.08	68.78
Solyc04g058120.1.1	Tomato	mitochondrion	16.71	68.13
HORVU7Hr1G023500.1	Barley	cytosol	19.41	67.92
TraesCS5A01G300400.1	Wheat	mitochondrion	69.54	67.89
Zm00001d004413_P002	Maize	mitochondrion	69.81	67.8
EES11801	Sorghum	mitochondrion	69.81	67.1
VIT_14s0030g01520.t01	Wine grape	cytosol	51.48	59.13
HORVU2Hr1G000280.3	Barley	golgi, peroxisome, plastid	69.54	56.58
VIT_14s0030g01550.t01	Wine grape	cytosol	49.6	53.8
VIT_05s0094g00780.t01	Wine grape	plastid	55.26	53.66
VIT_14s0030g01540.t01	Wine grape	cytosol, mitochondrion, plastid	50.4	47.95
PGSC0003DMT400080490	Potato	cytosol, mitochondrion, nucleus, plastid	16.98	47.73
VIT_08s0056g00820.t01	Wine grape	plastid	46.36	44.1
VIT_14s0030g01490.t01	Wine grape	cytosol	51.21	43.28
CDY68838	Canola	mitochondrion	15.63	42.65
VIT_14s0030g01560.t01	Wine grape	endoplasmic reticulum, extracellular	53.91	28.53
VIT_19s0015g00380.t01	Wine grape	plastid	28.57	25.18

Protein Annotations

KEGG:00270+2.5.1.47	KEGG:00460+4.4.1.9	KEGG:00920+2.5.1.47	EntrezGene:100255091	wikigene:100255091	EntrezGene:100255826
wikigene:100255826	Gene3D:3.40.50.1100	MapMan:50.2.5	EMBL:AM424720	ProteinID:CAN62383	ProteinID:CAN62383.1
InterPro:CAS	ProteinID:CBI40395	ProteinID:CBI40395.3	InterPro:CysK	InterPro:Cys_synth	UniProt:D7UCD0
EMBL:FN596755	GO:GO:0003674	GO:GO:0003824	GO:GO:0004124	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006535	GO:GO:0008150
GO:GO:0008152	GO:GO:0008652	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0019344
GO:GO:0019499	GO:GO:0030170	GO:GO:0050017	EntrezGene:LOC100255091	wikigene:LOC100255091	EntrezGene:LOC100255826
wikigene:LOC100255826	InterPro:P-phosphate_BS	PFAM:PF00291	InterPro:PLP-dep	ScanProsite:PS00901	PANTHER:PTHR10314
PANTHER:PTHR10314:SF80	SUPFAM:SSF53686	TIGR:TC51968	TIGRFAMs:TIGR01136	TIGRFAMs:TIGR01139	InterPro:Trypto_synt_PLP_dependent
UniParc:UPI00015CAC0D	ArrayExpress:VIT_15s0046g02300	EnsemblPlantsGene:VIT_15s0046g02300	EnsemblPlants:VIT_15s0046g02300.t01	unigene:Vvi.2604	RefSeq:XP_002276013
RefSeq:XP_002276013.1	RefSeq:XP_003633951	RefSeq:XP_003633951.1	RefSeq:XP_003633952	RefSeq:XP_003633952.1	SEG:seg

Description

Cysteine synthase [Source:UniProtKB/TrEMBL;Acc:D7UCD0]

Coordinates

chr15:-:19103630..19106594

Molecular Weight (calculated)

40501.3 Da

IEP (calculated)

9.199

GRAVY (calculated)

-0.158

Length

371 amino acids

Sequence
(BLAST)

001: MAALSSFFKR KSSIPFTSLA IRRWFSTQPI LDSPSFSQRI RDLPKDLPGT NIKKEVSQLI GKTPLVFLNK VTEGCGAYVA VKQEMMQPTA SIKDRPALAM
101: ITDAEDKQLI TPGKTVLIEP TSGNMGISMA FMAAMKGYKM VLTMPSYTSL ERRVTMRAFG ADLILTDPTK GMGGTVKKAY ELLESTPDAF MLQQFSNPAN
201: TQVHFETTGP EIWEDTRGQV DIFIMGIGSG GTVSGVGRYL KSQNPNVKIY GLEPTESNVL NGGKPGPHHI TGNGVGFKPD ILDMDVMEEV LMVSSEDAVN
301: MARQLALKEG LMVGISSGAN TVAALRLARR PENKGKLIVT IHPSFGERYL SSVLFQELRK EAENMQPVSV D

Best Arabidopsis Sequence Match ( AT3G61440.1 )
(BLAST)

001: MASVSRRLLR RETIPCFSHT VRKLFSTVGS PSFAQRLRDL PKDFPSTNAK RDASLLIGKT PLVFLNKVTE GCEAYVAAKQ EHFQPTCSIK DRPAIAMIAD
101: AEKKKLIIPG KTTLIEPTSG NMGISLAFMA AMKGYRIIMT MPSYTSLERR VTMRSFGAEL VLTDPAKGMG GTVKKAYDLL DSTPDAFMCQ QFANPANTQI
201: HFDTTGPEIW EDTLGNVDIF VMGIGSGGTV SGVGRYLKSK NPNVKIYGVE PAESNILNGG KPGPHAITGN GVGFKPEILD MDVMESVLEV SSEDAIKMAR
301: ELALKEGLMV GISSGANTVA AIRLAKMPEN KGKLIVTIHA SFGERYLSSV LFDELRKEAE EMKPVSVD

Arabidopsis Description

CYSC1Bifunctional L-3-cyanoalanine synthase/cysteine synthase C1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9S757]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.