Factsheet for VIT_14s0030g01550.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_19s0014g03380.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G28020.1	VIT_19s0014g03380.t01	AT5G54390.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_14s0030g01520.t01	Wine grape	cytosol	83.04	87.93
KRG92757	Soybean	cytosol	72.51	76.78
KRH34052	Soybean	cytosol	72.22	76.23
GSMUA_Achr9P25760_001	Banana	cytosol	71.64	75.62
KRH13764	Soybean	cytosol	70.76	75.39
GSMUA_Achr11P...	Banana	cytosol	71.05	75.0
KXG24064	Sorghum	cytosol	71.05	74.77
Zm00001d031136_P003	Maize	plasma membrane	70.76	74.46
GSMUA_Achr4P21350_001	Banana	cytosol	70.76	74.46
GSMUA_Achr3P30900_001	Banana	cytosol, unclear	70.76	74.46
TraesCS5D01G027600.1	Wheat	cytosol, golgi	70.18	73.85
KRH34037	Soybean	cytosol	69.3	73.37
KRH43690	Soybean	cytosol	48.54	71.24
Solyc01g097950.2.1	Tomato	cytosol	66.67	70.59
Bra036115.1-P	Field mustard	cytosol	66.37	70.28
AT5G28020.1	Thale cress	cytosol	66.08	69.97
AT5G28030.2	Thale cress	cytosol	65.79	69.66
AT3G04940.1	Thale cress	cytosol	65.5	69.14
CDY50768	Canola	cytosol	64.62	68.85
CDY69239	Canola	cytosol	64.62	68.85
TraesCS2B01G316800.1	Wheat	cytosol	65.79	68.81
Os12t0625000-01	Rice	plasma membrane	69.59	68.59
CDY41911	Canola	cytosol	64.33	68.54
TraesCS2A01G300600.1	Wheat	cytosol	65.5	68.5
CDY05586	Canola	cytosol	64.62	68.42
CDY52498	Canola	cytosol	64.62	68.42
Bra009985.1-P	Field mustard	cytosol	55.26	68.23
Solyc01g097930.2.1	Tomato	cytosol	64.33	68.11
CDX86187	Canola	cytosol	60.53	68.09
CDX74160	Canola	cytosol	63.74	67.91
Solyc01g097940.1.1	Tomato	plasma membrane	38.89	67.86
CDY00007	Canola	cytosol	64.04	67.8
CDX80680	Canola	cytosol	60.23	67.76
CDY19703	Canola	cytosol	63.45	67.18
CDY41913	Canola	cytosol	59.06	66.45
Solyc01g097920.2.1	Tomato	cytosol, plastid	69.01	66.29
CDY19702	Canola	mitochondrion	67.25	65.53
HORVU2Hr1G074630.2	Barley	cytosol	55.56	65.52
VIT_14s0030g01490.t01	Wine grape	cytosol	82.75	64.46
CDY00008	Canola	mitochondrion	66.08	64.39
VIT_14s0030g01540.t01	Wine grape	cytosol, mitochondrion, plastid	71.93	63.08
TraesCS2D01G298600.2	Wheat	cytosol	65.5	62.57
Zm00001d003717_P001	Maize	cytosol	64.33	62.5
KXG26295	Sorghum	cytosol	63.74	62.29
Bra036114.1-P	Field mustard	cytosol	61.4	61.4
KRG92761	Soybean	cytosol	57.02	58.91
HORVU3Hr1G040910.1	Barley	mitochondrion	5.85	58.82
VIT_05s0094g00780.t01	Wine grape	plastid	65.5	58.64
TraesCS5A01G022200.1	Wheat	plastid	69.88	55.84
HORVU5Hr1G005980.2	Barley	plastid	70.76	55.38
Bra001131.1-P	Field mustard	mitochondrion	64.62	55.25
TraesCS5B01G018700.3	Wheat	plastid	70.76	55.13
VIT_08s0056g00820.t01	Wine grape	plastid	57.6	50.51
CDY41915	Canola	cytosol	9.06	50.0
HORVU5Hr1G015070.1	Barley	extracellular	9.94	50.0
VIT_15s0046g02300.t01	Wine grape	mitochondrion	53.8	49.6
Bra020605.1-P	Field mustard	mitochondrion	62.57	49.31
HORVU5Hr1G082120.2	Barley	mitochondrion, plastid	26.02	47.59
Bra040417.1-P	Field mustard	cytosol	42.98	47.12
VIT_04s0044g00250.t01	Wine grape	mitochondrion	49.42	47.08
VIT_14s0030g01560.t01	Wine grape	endoplasmic reticulum, extracellular	75.15	36.66
HORVU1Hr1G031220.3	Barley	plastid	37.72	31.7
VIT_19s0015g00380.t01	Wine grape	plastid	32.46	26.37

Protein Annotations

KEGG:00270+2.5.1.47	KEGG:00920+2.5.1.47	EntrezGene:100247043	wikigene:100247043	Gene3D:3.40.50.1100	MapMan:50.2.5
ProteinID:CCB58110	ProteinID:CCB58110.1	InterPro:CysK	InterPro:Cys_synth	UniProt:F6HTU9	EMBL:FN596249
GO:GO:0003674	GO:GO:0003824	GO:GO:0004124	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006535	GO:GO:0008150	GO:GO:0008152	GO:GO:0008652
GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0019344	GO:GO:0030170	EntrezGene:LOC100247043
wikigene:LOC100247043	InterPro:P-phosphate_BS	PFAM:PF00291	InterPro:PLP-dep	ScanProsite:PS00901	PANTHER:PTHR10314
PANTHER:PTHR10314:SF97	SUPFAM:SSF53686	TIGRFAMs:TIGR01136	TIGRFAMs:TIGR01139	InterPro:Trypto_synt_PLP_dependent	UniParc:UPI0002109B99
ArrayExpress:VIT_14s0030g01550	EnsemblPlantsGene:VIT_14s0030g01550	EnsemblPlants:VIT_14s0030g01550.t01	unigene:Vvi.20090	RefSeq:XP_002275778	RefSeq:XP_002275778.1
SEG:seg	:	:	:	:	:

Description

Cysteine synthase [Source:UniProtKB/TrEMBL;Acc:F6HTU9]

Coordinates

chr14:-:6241059..6244463

Molecular Weight (calculated)

36625.8 Da

IEP (calculated)

6.306

GRAVY (calculated)

0.102

Length

342 amino acids

Sequence
(BLAST)

001: MVFCFRIWDM RLWNICKDGM EDKCAIANDV TELIGNTPLV YLNNIADGCV ARIAAKLEIM EPCSSVKDRI GYSMINDAEE KGLITPGQTV LIEATSGNTG
101: IGLAFIAAAK GYKLILVMPS IVNLERKIVV RAFGAELYLT DIAKGIKGVF DKADEILKNT PNGYLLNQFE NPANPKIHYE TTGPEIWKGT GGKVDALVSG
201: IGTGGTATGA GHFLKEKNPK IKVYGVEPCE SAVLNGGTPG PHKILGIGTG IIPKVLDVKL LDEVVQISSD EAFETAKLLA LKEGLLVGMS SGAAAAAAIK
301: VAKRPENAGK LITVIFPSFG ERYLSSMLFE SIKKEAENMK FD

Best Arabidopsis Sequence Match ( AT4G14880.5 )
(BLAST)

001: MASRIAKDVT ELIGNTPLVY LNNVAEGCVG RVAAKLEMME PCSSVKDRIG FSMISDAEKK GLIKPGESVL IEPTSGNTGV GLAFTAAAKG YKLIITMPAS
101: MSTERRIILL AFGVELVLTD PAKGMKGAIA KAEEILAKTP NGYMLQQFEN PANPKIHYET TGPEIWKGTG GKIDGFVSGI GTGGTITGAG KYLKEQNANV
201: KLYGVEPVES AILSGGKPGP HKIQGIGAGF IPSVLNVDLI DEVVQVSSDE SIDMARQLAL KEGLLVGISS GAAAAAAIKL AQRPENAGKL FVAIFPSFGE
301: RYLSTVLFDA TRKEAEAMTF EA

Arabidopsis Description

OASA1Cysteine synthase 1 [Source:UniProtKB/Swiss-Prot;Acc:P47998]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.