Factsheet for Zm00001d031136_P003

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 20408568
plasma membrane: 23353019
mitochondrion: 27297264
plasma membrane: 27341663

msms PMID: 23353019 doi

D Hopff, S Wienkoop, S Lüthje

University of Hamburg, Biocenter Klein Flottbek and Botanical Garden, Plant Physiology, Ohnhorststraße 18, D-22609 Hamburg, Germany.

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d051988_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G28020.1	Zm00001d051988_P001	AT5G54390.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG24064	Sorghum	cytosol	98.77	98.77
HORVU3Hr1G040910.1	Barley	mitochondrion	9.54	91.18
TraesCS5D01G027600.1	Wheat	cytosol, golgi	91.08	91.08
GSMUA_Achr3P30900_001	Banana	cytosol, unclear	85.85	85.85
Os12t0625000-01	Rice	plasma membrane	90.46	84.73
PGSC0003DMT400082113	Potato	cytosol	83.69	83.69
Solyc09g082060.2.1	Tomato	cytosol, nucleus, plastid	83.38	83.38
KRH27640	Soybean	cytosol	83.38	83.38
KRH68699	Soybean	cytosol	82.77	82.77
CDY68436	Canola	cytosol	81.85	82.61
Bra039708.1-P	Field mustard	cytosol	81.85	82.61
KRG96937	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	82.46	82.46
CDY42795	Canola	cytosol	80.92	81.68
AT4G14880.5	Thale cress	cytosol	80.92	81.68
Bra036910.1-P	Field mustard	plastid	79.69	81.19
CDY29778	Canola	cytosol, peroxisome, plastid	75.69	81.19
KRH77854	Soybean	cytosol	18.46	81.08
CDY09039	Canola	cytosol	77.54	80.77
AT3G22460.1	Thale cress	cytosol	61.23	79.6
KRG91325	Soybean	cytosol, mitochondrion, nucleus	79.08	79.08
VIT_14s0030g01520.t01	Wine grape	cytosol	74.46	74.92
KRH35519	Soybean	cytosol	69.85	74.43
HORVU5Hr1G015070.1	Barley	extracellular	15.38	73.53
KRH13764	Soybean	cytosol	72.0	72.9
KRG92757	Soybean	cytosol	71.38	71.83
VIT_14s0030g01550.t01	Wine grape	cytosol	74.46	70.76
KRH34052	Soybean	cytosol	70.46	70.68
KRH34037	Soybean	cytosol	69.23	69.66
AT5G28020.1	Thale cress	cytosol	68.62	69.04
TraesCS5A01G022200.1	Wheat	plastid	90.77	68.93
CDY69239	Canola	cytosol	67.69	68.54
CDY41911	Canola	cytosol	67.38	68.22
CDY50768	Canola	cytosol	67.08	67.91
CDX74160	Canola	cytosol	66.77	67.6
AT3G04940.1	Thale cress	cytosol	67.38	67.59
Bra036115.1-P	Field mustard	cytosol	67.08	67.49
CDY52498	Canola	cytosol	67.08	67.49
CDY00007	Canola	cytosol	67.08	67.49
Zm00001d003717_P001	Maize	cytosol	72.92	67.33
TraesCS5B01G018700.3	Wheat	plastid	90.77	67.2
HORVU5Hr1G005980.2	Barley	plastid	90.15	67.05
KRH43690	Soybean	cytosol	48.0	66.95
Solyc01g097950.2.1	Tomato	cytosol	66.46	66.87
CDY05586	Canola	cytosol	66.46	66.87
CDY19703	Canola	cytosol	66.46	66.87
Bra009985.1-P	Field mustard	cytosol	56.92	66.79
CDX86187	Canola	cytosol	62.46	66.78
AT5G28030.2	Thale cress	cytosol	66.15	66.56
CDY41913	Canola	cytosol	61.85	66.12
CDX80680	Canola	cytosol	61.54	65.79
Solyc01g097940.1.1	Tomato	plasma membrane	39.38	65.31
Solyc01g097920.2.1	Tomato	cytosol, plastid	71.08	64.89
Solyc01g097930.2.1	Tomato	cytosol	64.31	64.71
CDY00008	Canola	mitochondrion	67.08	62.11
CDY19702	Canola	mitochondrion	67.08	62.11
HORVU5Hr1G082120.2	Barley	mitochondrion, plastid	35.38	61.5
Bra036114.1-P	Field mustard	cytosol	64.62	61.4
VIT_14s0030g01540.t01	Wine grape	cytosol, mitochondrion, plastid	72.0	60.0
Zm00001d040235_P005	Maize	plastid	72.62	59.6
Zm00001d008379_P001	Maize	plastid	72.92	59.55
KRG92761	Soybean	cytosol	57.54	56.5
Bra001131.1-P	Field mustard	mitochondrion	67.69	55.0
VIT_14s0030g01490.t01	Wine grape	cytosol	73.85	54.67
CDY41915	Canola	cytosol	10.15	53.23
Zm00001d004413_P002	Maize	mitochondrion	60.92	51.83
Bra020605.1-P	Field mustard	mitochondrion	66.15	49.54
Zm00001d045327_P001	Maize	cytosol, extracellular	52.0	48.84
Zm00001d045340_P004	Maize	cytosol	51.69	47.46
Bra040417.1-P	Field mustard	cytosol	43.38	45.19
Zm00001d045347_P001	Maize	mitochondrion	26.15	39.91
Zm00001d045344_P001	Maize	mitochondrion	26.15	39.91
Zm00001d045341_P003	Maize	mitochondrion	25.85	39.44
VIT_14s0030g01560.t01	Wine grape	endoplasmic reticulum, extracellular	84.92	39.37
HORVU1Hr1G031220.3	Barley	plastid	48.0	38.33
Zm00001d045350_P001	Maize	mitochondrion	23.69	36.67
Zm00001d043101_P001	Maize	plastid	21.85	36.6
Zm00001d028220_P001	Maize	plastid	34.77	23.06

Protein Annotations

KEGG:00270+2.5.1.47	KEGG:00920+2.5.1.47	Gene3D:3.40.50.1100	MapMan:4.1.4.2.2	EntrezGene:542438	UniProt:B8A377
EMBL:BT056019	EMBL:BT067799	InterPro:CysK	InterPro:Cys_synth	GO:GO:0003674	GO:GO:0003824
GO:GO:0004124	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006535
GO:GO:0008150	GO:GO:0008152	GO:GO:0008652	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740
GO:GO:0019344	ProteinID:ONM02242.1	InterPro:P-phosphate_BS	PFAM:PF00291	InterPro:PLP-dep	ScanProsite:PS00901
PANTHER:PTHR10314	PANTHER:PTHR10314:SF160	SUPFAM:SSF53686	TIGRFAMs:TIGR01136	TIGRFAMs:TIGR01139	InterPro:Trypto_synt_PLP_dependent
UniParc:UPI0001917714	EnsemblPlantsGene:Zm00001d031136	EnsemblPlants:Zm00001d031136_P003	EnsemblPlants:Zm00001d031136_T003	SEG:seg	:

Description

cysteine synthase2 cysteine synthase2

Coordinates

chr1:-:179010349..179015072

Molecular Weight (calculated)

34135.5 Da

IEP (calculated)

5.522

GRAVY (calculated)

0.050

Length

325 amino acids

Sequence
(BLAST)

001: MGEASPSIAK DVTELIGNTP LVYLNKVTDG CVGRVAAKLE SMEPCSSVKD RIGYSMITDA EEKGLITPGV SVLIEPTSGN TGIGLAFMAA AKGYKLTLTM
101: PASMSMERRI ILKAFGAELV LTDPLLGMKG AVKKAEEIQA KTPNSYILQQ FENPANPKIH YETTGPEIWK ATAGKIDGLV SGIGTGGTIT GTGRYLREQN
201: PNVKLYGVEP VESAVLNGGK PGPHKIQGIG AGFIPGVLDV DLLDETLQVS SDEAIETAKA LALKEGLLVG ISSGAAAAAA VRLAKRPENA GKLFVVVFPS
301: FGERYLSSVL FQSIKKEAES MVVEP

Best Arabidopsis Sequence Match ( AT4G14880.5 )
(BLAST)

001: MASRIAKDVT ELIGNTPLVY LNNVAEGCVG RVAAKLEMME PCSSVKDRIG FSMISDAEKK GLIKPGESVL IEPTSGNTGV GLAFTAAAKG YKLIITMPAS
101: MSTERRIILL AFGVELVLTD PAKGMKGAIA KAEEILAKTP NGYMLQQFEN PANPKIHYET TGPEIWKGTG GKIDGFVSGI GTGGTITGAG KYLKEQNANV
201: KLYGVEPVES AILSGGKPGP HKIQGIGAGF IPSVLNVDLI DEVVQVSSDE SIDMARQLAL KEGLLVGISS GAAAAAAIKL AQRPENAGKL FVAIFPSFGE
301: RYLSTVLFDA TRKEAEAMTF EA

Arabidopsis Description

OASA1Cysteine synthase 1 [Source:UniProtKB/Swiss-Prot;Acc:P47998]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.