Factsheet for Zm00001d040235_P005

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 20089766
extracellular: 20408568
plastid: 22065420
plastid: 23198870

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d008379_P001
Zm00001d028154_P001
Zm00001d040235_P005

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G59760.1	Zm00001d028154_P001	AT3G13110.1	11168407
AT3G59760.1	Zm00001d028154_P001	AT3G13110.1	12063244
AT3G59760.1	Zm00001d008379_P001	AT3G59760.1	11168407
AT3G59760.1	Zm00001d040235_P005	AT3G59760.1	11168407

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d008379_P001	Maize	plastid	94.7	94.22
EES02674	Sorghum	plastid	95.2	93.78
Os01t0978100-01	Rice	plastid	83.33	83.76
TraesCS3A01G087100.1	Wheat	plastid	80.56	82.01
TraesCS3D01G087300.1	Wheat	plastid	80.81	81.63
TraesCS3B01G102500.1	Wheat	golgi, plastid	80.56	81.38
GSMUA_Achr5P17120_001	Banana	plastid	74.24	76.56
VIT_05s0094g00780.t01	Wine grape	plastid	72.47	75.13
GSMUA_Achr9P02430_001	Banana	plastid	71.21	74.21
KRH71273	Soybean	nucleus, plastid	72.98	73.35
KRH50190	Soybean	nucleus, plastid	71.97	73.26
Zm00001d031136_P003	Maize	plasma membrane	59.6	72.62
CDY23400	Canola	plastid	70.45	71.72
Solyc08g014340.2.1	Tomato	plastid	69.7	71.5
Bra037682.1-P	Field mustard	plastid	70.2	71.47
AT2G43750.1	Thale cress	plastid	70.71	71.43
PGSC0003DMT400059624	Potato	cytosol, plastid	69.44	71.24
CDY30438	Canola	plastid	69.95	71.21
CDY17914	Canola	plastid	69.44	70.15
Bra004781.1-P	Field mustard	plastid	69.44	69.44
CDX79804	Canola	plastid	69.19	69.19
Bra014529.1-P	Field mustard	plastid	68.69	64.45
CDY45790	Canola	plastid	68.94	63.93
Zm00001d003717_P001	Maize	cytosol	56.82	63.92
CDX89032	Canola	plastid	68.94	63.64
AT3G59760.1	Thale cress	plastid	69.19	63.28
Zm00001d004413_P002	Maize	mitochondrion	51.01	52.88
Zm00001d045327_P001	Maize	cytosol, extracellular	42.42	48.55
Zm00001d045340_P004	Maize	cytosol	42.17	47.18
Zm00001d045344_P001	Maize	mitochondrion	21.72	40.38
Zm00001d045347_P001	Maize	mitochondrion	21.72	40.38
Zm00001d045341_P003	Maize	mitochondrion	21.46	39.91
Zm00001d043101_P001	Maize	plastid	18.43	37.63
Zm00001d045350_P001	Maize	mitochondrion	18.69	35.24
Zm00001d028220_P001	Maize	plastid	27.53	22.24

Protein Annotations

KEGG:00270+2.5.1.47	KEGG:00920+2.5.1.47	EntrezGene:100272829	Gene3D:3.40.50.1100	MapMan:4.1.4.2.2	UniProt:B4FR08
EMBL:BT039546	InterPro:CysK	InterPro:Cys_synth	GO:GO:0003674	GO:GO:0003824	GO:GO:0004124
GO:GO:0006535	GO:GO:0008150	GO:GO:0008152	GO:GO:0008652	GO:GO:0009058	GO:GO:0009987
GO:GO:0016740	GO:GO:0019344	ProteinID:ONM30904.1	InterPro:P-phosphate_BS	PFAM:PF00291	InterPro:PLP-dep
ScanProsite:PS00901	PANTHER:PTHR10314	PANTHER:PTHR10314:SF160	SUPFAM:SSF53686	TIGRFAMs:TIGR01136	TIGRFAMs:TIGR01139
InterPro:Trypto_synt_PLP_dependent	UniParc:UPI00017B7A97	EnsemblPlantsGene:Zm00001d040235	EnsemblPlants:Zm00001d040235_P005	EnsemblPlants:Zm00001d040235_T005	SEG:seg

Description

Cysteine synthase mitochondrial

Coordinates

chr3:-:33201233..33208919

Molecular Weight (calculated)

41577.0 Da

IEP (calculated)

8.582

GRAVY (calculated)

-0.085

Length

396 amino acids

Sequence
(BLAST)

001: MSSWSSPSSA AAASGARFGP FPSRAQRLVP YPSLARGTPA STLVLRPHPD GRGHGHLAHT GSSSSRCRAV AAEVEGLNIA NHVSQLIGKT PMVYLNNVVK
101: GSVANVAAKL EIMEPCCSVK DRIGYSMIND AEQKGLITPG KSVLVEATSG NTGIGLAFIA ASKGYKLILT MPSSMSMERR VLLRAFGAEL VLTDAAKGMK
201: GAVDKATEIL NKTPNSYMLQ QFDNPANPKV HYETTGPEIW EDSKGKVDIL IGGIGTGGTI SGAGRFLKEK NSGIKVIGIE PSESNILSGG KPGPHKIQGI
301: GAGFVPRNLD SDILDEVIEI SSDEAVETAK QLAVQEGLLV GISSGAAAAA AIKVAKRPEN AGKLIVVVFP SFGERYLSSV LYQSIREECE NMQPEP

Best Arabidopsis Sequence Match ( AT2G43750.2 )
(BLAST)

001: MAATSSSAFL LNPLTSRHRP FKYSPELSSL SLSSRKAAAF DVSSAAFTLK RQSRSDVVCK AVSIKPEAGV EGLNIADNAA QLIGKTPMVY LNNVVKGCVA
101: SVAAKLEIME PCCSVKDRIG YSMITDAEEK GLITPGKSVL VESTSGNTGI GLAFIAASKG YKLILTMPAS MSLERRVLLR AFGAELVLTE PAKGMTGAIQ
201: KAEEILKKTP NSYMLQQFDN PANPKIHYET TGPEIWEDTR GKIDILVAGI GTGGTITGVG RFIKERKPEL KVIGVEPTES AILSGGKPGP HKIQGIGAGF
301: VPKNLDLAIV DEYIAISSEE AIETSKQLAL QEGLLVGISS GAAAAAAIQV AKRPENAGKL IAVVFPSFGE RYLSTQLFQS IREECEQMQP EL

Arabidopsis Description

OASBCysteine synthase [Source:UniProtKB/TrEMBL;Acc:Q0WW95]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.