CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX89032
CDY45790

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G59760.1	CDX89032	AT3G59760.1	11168407
AT3G59760.1	CDY45790	AT3G59760.1	11168407

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89032	Canola	plastid	96.72	96.27
AT3G59760.1	Thale cress	plastid	85.71	84.53
CDY17914	Canola	plastid	73.54	80.1
CDY23400	Canola	plastid	72.83	79.95
CDX79804	Canola	plastid	73.77	79.55
CDY30438	Canola	plastid	72.37	79.43
VIT_05s0094g00780.t01	Wine grape	plastid	67.45	75.39
Solyc08g014340.2.1	Tomato	plastid	67.21	74.35
KRH50190	Soybean	nucleus, plastid	67.68	74.29
PGSC0003DMT400059624	Potato	cytosol, plastid	66.98	74.09
GSMUA_Achr5P17120_001	Banana	plastid	64.87	72.14
KRH71273	Soybean	nucleus, plastid	66.51	72.08
CDY42795	Canola	cytosol	53.86	71.43
GSMUA_Achr9P02430_001	Banana	plastid	63.47	71.32
CDY68436	Canola	cytosol	53.63	71.12
CDY29778	Canola	cytosol, peroxisome, plastid	50.35	70.96
Os01t0978100-01	Rice	plastid	65.11	70.56
CDY09039	Canola	cytosol	50.82	69.55
TraesCS3A01G087100.1	Wheat	plastid	63.0	69.15
TraesCS3D01G087300.1	Wheat	plastid	63.47	69.13
Zm00001d040235_P005	Maize	plastid	63.93	68.94
TraesCS3B01G102500.1	Wheat	golgi, plastid	63.23	68.88
Zm00001d008379_P001	Maize	plastid	63.93	68.59
EES02674	Sorghum	plastid	64.4	68.41
CDY41911	Canola	cytosol	51.05	67.91
CDY50768	Canola	cytosol	51.05	67.91
CDY00007	Canola	cytosol	51.29	67.8
CDY19703	Canola	cytosol	51.05	67.49
CDY52498	Canola	cytosol	50.59	66.87
CDX74160	Canola	cytosol	50.12	66.67
CDY69239	Canola	cytosol	50.12	66.67
CDY05586	Canola	cytosol	50.12	66.25
CDY41913	Canola	cytosol	46.37	65.13
CDX86187	Canola	cytosol	46.14	64.8
CDX80680	Canola	cytosol	45.67	64.14
CDY19702	Canola	mitochondrion	50.35	61.25
CDY00008	Canola	mitochondrion	49.65	60.4
CDY43932	Canola	mitochondrion	47.31	54.89
CDX89116	Canola	mitochondrion	47.07	54.62
CDX71737	Canola	mitochondrion	46.84	54.35
CDY29946	Canola	plastid	48.95	53.32
CDY21176	Canola	plastid	48.71	52.93
CDY48919	Canola	endoplasmic reticulum	38.88	52.7
CDY41915	Canola	cytosol	7.26	50.0
CDY68838	Canola	mitochondrion	11.71	36.76
CDY53756	Canola	endoplasmic reticulum	25.29	24.66
CDY52906	Canola	plastid	24.82	24.54

Protein Annotations

KEGG:00270+2.5.1.47	KEGG:00920+2.5.1.47	Gene3D:3.40.50.1100	MapMan:4.1.4.2.2	GO:A0A078I4J0	UniProt:A0A078I4J0
EnsemblPlants:CDY45790	ProteinID:CDY45790	ProteinID:CDY45790.1	InterPro:CysK	InterPro:Cys_synth	GO:GO:0003674
GO:GO:0003824	GO:GO:0004124	GO:GO:0006535	GO:GO:0008150	GO:GO:0008152	GO:GO:0008652
GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0019344	EnsemblPlantsGene:GSBRNA2T00082720001	InterPro:P-phosphate_BS
PFAM:PF00291	InterPro:PLP-dep	ScanProsite:PS00901	PANTHER:PTHR10314	PANTHER:PTHR10314:SF160	MetaCyc:PWY-6936
SUPFAM:SSF53686	TIGRFAMs:TIGR01136	TIGRFAMs:TIGR01139	InterPro:Trypto_synt_PLP_dependent	UniPathway:UPA00136	UniParc:UPI0004EEF99C
SEG:seg	:	:	:	:	:

Description

BnaC04g22760DCysteine synthase [Source:UniProtKB/TrEMBL;Acc:A0A078I4J0]

Coordinates

chrLK032636:+:185613..188763

Molecular Weight (calculated)

45412.0 Da

IEP (calculated)

8.576

GRAVY (calculated)

-0.034

Length

427 amino acids

Sequence
(BLAST)

001: MAMLMASRFN SEAKIASRFL STLLRNQRVT ASSSSSMASA SSSSALLLNP LTSSTLRHFR SSPEISSLSF SASGFPLGMK SQQSRSYGDV SKRDPCEAVK
101: LETGADGLNI AQNVSQLIGK TPMVYLNSMA KGCVANIAAK LEIMEPCCSV KDRIGYSMVT DAEQKGFISP GKSVLVEPTS GNTGIGLAFI AASRGYRLIL
201: TMPSSMSMER RVLLKAFGAE LVLTDPAKGM TGAVQKAEEI LKSTPDAYML QQFDNPANPK IHYETTGPEI WEDTKGKVDI FVAGIGTGGT ITGVGRFIKE
301: QNPKVQVIGV EPTESDILSG GKPGPHKIQG IGAGFIPKNL DRAIMDEVIA ISSEEAIETA KQLALKEGLM VGISSGAAAA AAIMVAKRPE NAGKLIAVVF
401: PSFGERYLST PLFQSIREEV EKMQPEI

Best Arabidopsis Sequence Match ( AT3G59760.3 )
(BLAST)

001: MVAMIMASRF NREAKLASQI LSTLLGNRSC YTSMAATSSS ALLLNPLTSS SSSSTLRRFR CSPEISSLSF SSASDFSLAM KRQSRSFADG SERDPSVVCE
101: AVKRETGPDG LNIADNVSQL IGKTPMVYLN SIAKGCVANI AAKLEIMEPC CSVKDRIGYS MVTDAEQKGF ISPGKSVLVE PTSGNTGIGL AFIAASRGYR
201: LILTMPASMS MERRVLLKAF GAELVLTDPA KGMTGAVQKA EEILKNTPDA YMLQQFDNPA NPKIHYETTG PEIWDDTKGK VDIFVAGIGT GGTITGVGRF
301: IKEKNPKTQV IGVEPTESDI LSGGKPGPHK IQGIGAGFIP KNLDQKIMDE VIAISSEEAI ETAKQLALKE GLMVGISSGA AAAAAIKVAK RPENAGKLIA
401: VVFPSFGERY LSTPLFQSIR EEVEKMQPEV

Arabidopsis Description

OASCCysteine synthase [Source:UniProtKB/TrEMBL;Acc:B9DFR6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.