CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 1
plastid 10
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER92698
EES02674

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G59760.1	EER92698	AT3G13110.1	11168407
AT3G59760.1	EER92698	AT3G13110.1	12063244
AT3G59760.1	EES02674	AT3G59760.1	11168407

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d040235_P005	Maize	plastid	93.78	95.2
Os01t0978100-01	Rice	plastid	82.59	84.26
TraesCS3D01G087300.1	Wheat	plastid	81.09	83.16
TraesCS3A01G087100.1	Wheat	plastid	80.35	83.03
TraesCS3B01G102500.1	Wheat	golgi, plastid	80.85	82.91
VIT_05s0094g00780.t01	Wine grape	plastid	72.64	76.44
GSMUA_Achr5P17120_001	Banana	plastid	72.64	76.04
GSMUA_Achr9P02430_001	Banana	plastid	69.9	73.95
KRH71273	Soybean	nucleus, plastid	72.39	73.86
KRH50190	Soybean	nucleus, plastid	70.9	73.26
KXG24064	Sorghum	cytosol	58.71	72.62
CDY23400	Canola	plastid	70.15	72.49
AT2G43750.1	Thale cress	plastid	70.4	72.19
Bra037682.1-P	Field mustard	plastid	69.65	71.98
Solyc08g014340.2.1	Tomato	plastid	68.91	71.76
CDY30438	Canola	plastid	69.4	71.72
PGSC0003DMT400059624	Potato	cytosol, plastid	68.66	71.5
CDY17914	Canola	plastid	69.4	71.17
Bra004781.1-P	Field mustard	plastid	69.4	70.45
CDX79804	Canola	plastid	69.15	70.2
Bra014529.1-P	Field mustard	plastid	68.16	64.93
CDY45790	Canola	plastid	68.41	64.4
CDX89032	Canola	plastid	68.41	64.1
AT3G59760.1	Thale cress	plastid	68.91	63.97
KXG26295	Sorghum	cytosol	54.73	62.86
EES03791	Sorghum	plastid	51.99	54.43
EES11801	Sorghum	mitochondrion	50.75	52.85
KXG19309	Sorghum	cytosol	43.78	50.87
EES04772	Sorghum	cytosol	42.29	49.85
KXG19307	Sorghum	cytosol	43.28	49.57
KXG19308	Sorghum	cytosol	42.54	49.0
OQU75833	Sorghum	cytosol	28.11	46.12
OQU75837	Sorghum	cytosol	26.62	40.38
EER95270	Sorghum	plastid	27.61	24.45

Protein Annotations

KEGG:00270+2.5.1.47	KEGG:00920+2.5.1.47	Gene3D:3.40.50.1100	MapMan:4.1.4.2.2	EntrezGene:8072387	UniProt:C5XFP1
InterPro:CysK	InterPro:Cys_synth	EnsemblPlants:EES02674	ProteinID:EES02674	ProteinID:EES02674.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0004124	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006535	GO:GO:0008150	GO:GO:0008152	GO:GO:0008652	GO:GO:0009058
GO:GO:0009987	GO:GO:0016740	GO:GO:0019344	GO:GO:0030170	InterPro:P-phosphate_BS	PFAM:PF00291
InterPro:PLP-dep	ScanProsite:PS00901	PANTHER:PTHR10314	PANTHER:PTHR10314:SF160	MetaCyc:PWY-6936	EnsemblPlantsGene:SORBI_3003G110100
SUPFAM:SSF53686	unigene:Sbi.1052	TIGRFAMs:TIGR01136	TIGRFAMs:TIGR01139	InterPro:Trypto_synt_PLP_dependent	UniParc:UPI0001A84DB1
RefSeq:XP_002457554.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:9932183..9935782

Molecular Weight (calculated)

42119.8 Da

IEP (calculated)

8.452

GRAVY (calculated)

-0.064

Length

402 amino acids

Sequence
(BLAST)

001: MSSWSSPSAA AAANTGARFG PFPCRALRLA PYPSLARGAP ASPPLVLRSH PHPGGRGHGL LARTGGSSPS SRCRAVAAEV EGLNIADNVT QLIGKTPMVY
101: LNNVVKGSVA NVAAKLEIME PCCSVKDRIG YSMINDAEER GLITPGKSVL VEATSGNTGI GLAFIAASKG YKLILTMPSS MSMERRVLLR AFGAELVLTD
201: AAKGMKGAVD KATEILNKTP NSYMLQQFDN PANPKVHYET TGPEIWEDSK GKVDIFIGGI GTGGTISGAG RFLKEKNPGI KVIGIEPSES NILSGGKPGP
301: HKIQGIGAGF VPRNLDSDIL DEVIEISSDE AVETAKQLAV QEGLLVGISS GAAAAAAIKV AKRPENAGKL IVVVFPSFGE RYLSTVLYQS IREECENMQP
401: EP

Best Arabidopsis Sequence Match ( AT2G43750.2 )
(BLAST)

001: MAATSSSAFL LNPLTSRHRP FKYSPELSSL SLSSRKAAAF DVSSAAFTLK RQSRSDVVCK AVSIKPEAGV EGLNIADNAA QLIGKTPMVY LNNVVKGCVA
101: SVAAKLEIME PCCSVKDRIG YSMITDAEEK GLITPGKSVL VESTSGNTGI GLAFIAASKG YKLILTMPAS MSLERRVLLR AFGAELVLTE PAKGMTGAIQ
201: KAEEILKKTP NSYMLQQFDN PANPKIHYET TGPEIWEDTR GKIDILVAGI GTGGTITGVG RFIKERKPEL KVIGVEPTES AILSGGKPGP HKIQGIGAGF
301: VPKNLDLAIV DEYIAISSEE AIETSKQLAL QEGLLVGISS GAAAAAAIQV AKRPENAGKL IAVVFPSFGE RYLSTQLFQS IREECEQMQP EL

Arabidopsis Description

OASBCysteine synthase [Source:UniProtKB/TrEMBL;Acc:Q0WW95]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.