Factsheet for TraesCS3B01G102500.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G087100.1
TraesCS3B01G102500.1
TraesCS3D01G087300.1
TraesCS4A01G042700.1
TraesCS4B01G263300.1
TraesCS4D01G263500.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G59760.1	TraesCS4A01G042700.1	AT3G13110.1	11168407
AT3G59760.1	TraesCS4B01G263300.1	AT3G13110.1	11168407
AT3G59760.1	TraesCS4D01G263500.1	AT3G13110.1	11168407
AT3G59760.1	TraesCS4A01G042700.1	AT3G13110.1	12063244
AT3G59760.1	TraesCS4B01G263300.1	AT3G13110.1	12063244
AT3G59760.1	TraesCS4D01G263500.1	AT3G13110.1	12063244
AT3G59760.1	TraesCS3A01G087100.1	AT3G59760.1	11168407
AT3G59760.1	TraesCS3B01G102500.1	AT3G59760.1	11168407
AT3G59760.1	TraesCS3D01G087300.1	AT3G59760.1	11168407

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G087300.1	Wheat	plastid	99.49	99.49
TraesCS3A01G087100.1	Wheat	plastid	97.96	98.71
Os01t0978100-01	Rice	plastid	84.18	83.76
Zm00001d008379_P001	Maize	plastid	82.4	81.16
EES02674	Sorghum	plastid	82.91	80.85
Zm00001d040235_P005	Maize	plastid	81.38	80.56
GSMUA_Achr5P17120_001	Banana	plastid	73.21	74.74
VIT_05s0094g00780.t01	Wine grape	plastid	72.45	74.35
PGSC0003DMT400059624	Potato	cytosol, plastid	72.45	73.58
Solyc08g014340.2.1	Tomato	plastid	72.19	73.32
KRH50190	Soybean	nucleus, plastid	71.94	72.49
GSMUA_Achr9P02430_001	Banana	plastid	70.15	72.37
KRH71273	Soybean	nucleus, plastid	72.7	72.33
CDY23400	Canola	plastid	71.68	72.24
CDY30438	Canola	plastid	71.17	71.72
Bra037682.1-P	Field mustard	plastid	71.17	71.72
AT2G43750.1	Thale cress	plastid	70.92	70.92
CDY17914	Canola	plastid	70.92	70.92
Bra004781.1-P	Field mustard	plastid	70.92	70.2
CDX79804	Canola	plastid	70.41	69.7
TraesCS2B01G316800.1	Wheat	cytosol	56.63	67.89
Bra014529.1-P	Field mustard	plastid	68.62	63.74
CDY45790	Canola	plastid	68.88	63.23
AT3G59760.1	Thale cress	plastid	69.64	63.05
CDX89032	Canola	plastid	68.88	62.94
TraesCS3B01G370200.3	Wheat	plastid	53.83	55.97
TraesCS5B01G300800.1	Wheat	mitochondrion	53.57	55.56
TraesCS5B01G018700.3	Wheat	plastid	59.69	53.3
TraesCS6B01G217200.2	Wheat	cytosol	43.62	50.15
TraesCS4B01G245100.1	Wheat	plastid	26.79	23.81

Protein Annotations

KEGG:00270+2.5.1.47	KEGG:00920+2.5.1.47	Gene3D:3.40.50.1100	MapMan:4.1.4.2.2	InterPro:CysK	InterPro:Cys_synth
GO:GO:0003674	GO:GO:0003824	GO:GO:0004124	GO:GO:0006535	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	InterPro:P-phosphate_BS	PFAM:PF00291	InterPro:PLP-dep
ScanProsite:PS00901	PANTHER:PTHR10314	PANTHER:PTHR10314:SF160	SUPFAM:SSF53686	TIGRFAMs:TIGR01136	TIGRFAMs:TIGR01139
EnsemblPlantsGene:TraesCS3B01G102500	EnsemblPlants:TraesCS3B01G102500.1	InterPro:Trypto_synt_PLP_dependent	TIGR:cd01561	SEG:seg	:

Description

No Description!

Coordinates

chr3B:-:68911306..68914488

Molecular Weight (calculated)

41161.8 Da

IEP (calculated)

6.319

GRAVY (calculated)

0.028

Length

392 amino acids

Sequence
(BLAST)

001: MAPWTPSPVA ATAAAASQAQ LGFSAARPAQ ARQAAVLPPL ARRFPGSSLL AVNAPAPSPS WRRHALATEV EGLNIADDVT QLIGKTPMVY LNKIVKGCVA
101: NVAAKLEIME PCCSVKDRIG ISMISDAEEK GLITPGKSVL VEATSGNTGI GLAFIAASRG YKLILTMPTS MSMERRVLLK AFGAELVLTD AAKGMKGALD
201: KATEILNKTP NSYMLEQFDN PANPKVHYET TGPEIWEDSK GKVDIFIGGI GTGGTISGAG RFLKEKNPDV KVIGVEPTES NILSGGKPGP HKIQGIGAGF
301: VPRNLDSDVL NEVIEISSDE AVETAKQLAL QEGLLVGISS GAAAAAAIKV AQRPENAGKL IVVVFPSFGE RYLSSVLFQS IREECEKMEA EA

Best Arabidopsis Sequence Match ( AT2G43750.2 )
(BLAST)

001: MAATSSSAFL LNPLTSRHRP FKYSPELSSL SLSSRKAAAF DVSSAAFTLK RQSRSDVVCK AVSIKPEAGV EGLNIADNAA QLIGKTPMVY LNNVVKGCVA
101: SVAAKLEIME PCCSVKDRIG YSMITDAEEK GLITPGKSVL VESTSGNTGI GLAFIAASKG YKLILTMPAS MSLERRVLLR AFGAELVLTE PAKGMTGAIQ
201: KAEEILKKTP NSYMLQQFDN PANPKIHYET TGPEIWEDTR GKIDILVAGI GTGGTITGVG RFIKERKPEL KVIGVEPTES AILSGGKPGP HKIQGIGAGF
301: VPKNLDLAIV DEYIAISSEE AIETSKQLAL QEGLLVGISS GAAAAAAIQV AKRPENAGKL IAVVFPSFGE RYLSTQLFQS IREECEQMQP EL

Arabidopsis Description

OASBCysteine synthase [Source:UniProtKB/TrEMBL;Acc:Q0WW95]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.