Factsheet for PGSC0003DMT400059624

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 11
mitochondrion 1

Predictors

GFP

MS/MS

Papers

cytosol: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400037270
PGSC0003DMT400057095
PGSC0003DMT400059624

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G59760.1	PGSC0003DMT400037270	AT3G13110.1	11168407
AT3G59760.1	PGSC0003DMT400057095	AT3G13110.1	11168407
AT3G59760.1	PGSC0003DMT400037270	AT3G13110.1	12063244
AT3G59760.1	PGSC0003DMT400057095	AT3G13110.1	12063244
AT3G59760.1	PGSC0003DMT400059624	AT3G59760.1	11168407

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g014340.2.1	Tomato	plastid	98.7	98.7
VIT_05s0094g00780.t01	Wine grape	plastid	76.17	76.96
KRH50190	Soybean	nucleus, plastid	77.2	76.61
CDY30438	Canola	plastid	75.91	75.32
Bra037682.1-P	Field mustard	plastid	75.65	75.06
CDY23400	Canola	plastid	75.65	75.06
KRH71273	Soybean	nucleus, plastid	75.65	74.11
CDY17914	Canola	plastid	75.13	73.98
GSMUA_Achr5P17120_001	Banana	plastid	73.58	73.96
CDX79804	Canola	plastid	75.65	73.74
Bra004781.1-P	Field mustard	plastid	75.13	73.23
PGSC0003DMT400082113	Potato	cytosol	61.66	73.23
GSMUA_Achr9P02430_001	Banana	plastid	72.02	73.16
Os01t0978100-01	Rice	plastid	74.61	73.1
TraesCS3A01G087100.1	Wheat	plastid	73.06	72.49
TraesCS3B01G102500.1	Wheat	golgi, plastid	73.58	72.45
AT2G43750.1	Thale cress	plastid	73.58	72.45
TraesCS3D01G087300.1	Wheat	plastid	73.32	72.19
Zm00001d008379_P001	Maize	plastid	71.76	69.6
Zm00001d040235_P005	Maize	plastid	71.24	69.44
EES02674	Sorghum	plastid	71.5	68.66
CDY45790	Canola	plastid	74.09	66.98
Bra014529.1-P	Field mustard	plastid	73.06	66.82
CDX89032	Canola	plastid	74.09	66.67
AT3G59760.1	Thale cress	plastid	74.61	66.51
PGSC0003DMT400016646	Potato	mitochondrion	52.33	57.55
PGSC0003DMT400000156	Potato	mitochondrion	50.78	56.48
PGSC0003DMT400034224	Potato	cytosol	10.36	54.79
PGSC0003DMT400040030	Potato	cytosol	14.77	53.27
PGSC0003DMT400021594	Potato	cytosol	13.73	52.48
PGSC0003DMT400012263	Potato	cytosol	13.99	50.47
PGSC0003DMT400064098	Potato	cytosol	9.84	48.72
PGSC0003DMT400080490	Potato	cytosol, mitochondrion, nucleus, plastid	11.92	34.85
PGSC0003DMT400057393	Potato	plastid	29.27	26.9

Protein Annotations

KEGG:00270+2.5.1.47	KEGG:00920+2.5.1.47	Gene3D:3.40.50.1100	MapMan:4.1.4.2.2	ProteinID:AAC25636	ProteinID:AAC25636.1
EMBL:AB029512	EMBL:AB029513	EMBL:AF044173	ProteinID:BAB20862	ProteinID:BAB20862.1	ProteinID:BAB20863
ProteinID:BAB20863.1	InterPro:CysK	InterPro:Cys_synth	GO:GO:0003674	GO:GO:0003824	GO:GO:0004124
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006535	GO:GO:0008150
GO:GO:0008152	GO:GO:0008652	GO:GO:0009058	GO:GO:0009507	GO:GO:0009509	GO:GO:0009536
GO:GO:0009570	GO:GO:0009987	GO:GO:0016740	GO:GO:0019344	UniProt:M1C4H8	InterPro:P-phosphate_BS
PFAM:PF00291	EnsemblPlantsGene:PGSC0003DMG400023171	PGSC:PGSC0003DMG400023171	EnsemblPlants:PGSC0003DMT400059624	InterPro:PLP-dep	ScanProsite:PS00901
PANTHER:PTHR10314	PANTHER:PTHR10314:SF160	SUPFAM:SSF53686	TIGRFAMs:TIGR01136	TIGRFAMs:TIGR01139	InterPro:Trypto_synt_PLP_dependent
UniParc:UPI000295BAAD	SEG:seg	:	:	:	:

Description

Cysteine synthase [Source:PGSC_GENE;Acc:PGSC0003DMG400023171]

Coordinates

chr8:-:7438089..7445668

Molecular Weight (calculated)

40939.7 Da

IEP (calculated)

5.327

GRAVY (calculated)

0.022

Length

386 amino acids

Sequence
(BLAST)

001: MASFINNTLT SLCNTKSEAN NLFKISPLRG QSLGFSKLNG SRKVAFPSVV CKAVSVPTKS STEIEGLNIA EDVTQLIGNT PMVYLNTIAK GCVANIAAKL
101: EIMEPCCSVK DRIGFSMIVD AEEKGLISPG KTVLVEPTSG NTGIGLAFIA ASRGYKLILT MPASMSLERR VILKAFGAEL VLTDPVKGMK GAVSKAEEIL
201: NNTPDAYILQ QFDNPANPKI HYETTGPEIW EDTKGKIDIL VAGIGTGGTI TGTGRFLKEQ NPNIKIIGVE PTESNVLSGG KPGPHKIQGI GAGFIPGNLD
301: QDVMDEVIEI SSDEAVETAK QLALQEGLLV GISSGAAALA AIQVGKRPEN AGKLIGVVFP SYGERYLSSI LFQSIREECE KMKPEL

Best Arabidopsis Sequence Match ( AT3G59760.3 )
(BLAST)

001: MVAMIMASRF NREAKLASQI LSTLLGNRSC YTSMAATSSS ALLLNPLTSS SSSSTLRRFR CSPEISSLSF SSASDFSLAM KRQSRSFADG SERDPSVVCE
101: AVKRETGPDG LNIADNVSQL IGKTPMVYLN SIAKGCVANI AAKLEIMEPC CSVKDRIGYS MVTDAEQKGF ISPGKSVLVE PTSGNTGIGL AFIAASRGYR
201: LILTMPASMS MERRVLLKAF GAELVLTDPA KGMTGAVQKA EEILKNTPDA YMLQQFDNPA NPKIHYETTG PEIWDDTKGK VDIFVAGIGT GGTITGVGRF
301: IKEKNPKTQV IGVEPTESDI LSGGKPGPHK IQGIGAGFIP KNLDQKIMDE VIAISSEEAI ETAKQLALKE GLMVGISSGA AAAAAIKVAK RPENAGKLIA
401: VVFPSFGERY LSTPLFQSIR EEVEKMQPEV

Arabidopsis Description

OASCCysteine synthase [Source:UniProtKB/TrEMBL;Acc:B9DFR6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.