Factsheet for Solyc08g014340.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 30535734
plasma membrane: 30535734
plastid: 30535734

plastid: 20363867
plastid: 22908117
plastid: 28183294
nucleus: 28394025
extracellular: 29876421

gfp PMID: 30535734 doi

D Liu, J Lu, H Li, J Wang, Y Pei

College of Life Science, Shanxi University, Taiyuan, 030006, China., College of Life Science, Shanxi University, Taiyuan, 030006, China. peiyanxi@sxu.edu.cn., Scientific Instrument Center, Shanxi University, Taiyuan, 030006, China.

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 28183294 doi

R Tamburino, M Vitale, A Ruggiero, M Sassi, L Sannino, S Arena, A Costa, G Batelli, N Zambrano, A Scaloni, S Grillo, N Scotti

Center of Genetics Engineering (CEINGE) Biotecnologie Avanzate S.c. a R.l, via Pansini, 80100, Napoli, Italy., Department of Molecular Medicine and Medical Biotechnology, University of Naples Federico II, via Pansini, 80100, Napoli, Italy., Institute for the Animal Production System in the Mediterranean Environment, National Research Council of Italy (CNR-ISPAAM), via Argine 1085, 80147, Napoli, Italy., Institute of Biosciences and BioResources, National Research Council of Italy (CNR-IBBR), via Università 133, 80055, Portici, NA, Italy., Institute of Biosciences and BioResources, National Research Council of Italy (CNR-IBBR), via Università 133, 80055, Portici, NA, Italy. nscotti@unina.it.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc07g065340.1.1
Solyc08g014340.2.1
Solyc10g006040.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G59760.1	Solyc07g065340.1.1	AT3G13110.1	11168407
AT3G59760.1	Solyc10g006040.1.1	AT3G13110.1	11168407
AT3G59760.1	Solyc07g065340.1.1	AT3G13110.1	12063244
AT3G59760.1	Solyc10g006040.1.1	AT3G13110.1	12063244
AT3G59760.1	Solyc08g014340.2.1	AT3G59760.1	11168407

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400059624	Potato	cytosol, plastid	98.7	98.7
VIT_05s0094g00780.t01	Wine grape	plastid	76.17	76.96
KRH50190	Soybean	nucleus, plastid	77.2	76.61
CDY30438	Canola	plastid	76.17	75.58
Bra037682.1-P	Field mustard	plastid	75.91	75.32
CDY23400	Canola	plastid	75.91	75.32
CDY17914	Canola	plastid	75.65	74.49
Solyc09g082060.2.1	Tomato	cytosol, nucleus, plastid	62.69	74.46
CDX79804	Canola	plastid	76.17	74.24
KRH71273	Soybean	nucleus, plastid	75.65	74.11
GSMUA_Achr5P17120_001	Banana	plastid	73.58	73.96
Bra004781.1-P	Field mustard	plastid	75.65	73.74
GSMUA_Achr9P02430_001	Banana	plastid	72.28	73.42
Os01t0978100-01	Rice	plastid	74.35	72.84
AT2G43750.1	Thale cress	plastid	73.83	72.7
TraesCS3A01G087100.1	Wheat	plastid	72.8	72.24
TraesCS3B01G102500.1	Wheat	golgi, plastid	73.32	72.19
TraesCS3D01G087300.1	Wheat	plastid	73.06	71.94
Zm00001d008379_P001	Maize	plastid	72.02	69.85
Zm00001d040235_P005	Maize	plastid	71.5	69.7
EES02674	Sorghum	plastid	71.76	68.91
CDY45790	Canola	plastid	74.35	67.21
Bra014529.1-P	Field mustard	plastid	73.32	67.06
CDX89032	Canola	plastid	74.35	66.9
Solyc01g097940.1.1	Tomato	plasma membrane	33.94	66.84
AT3G59760.1	Thale cress	plastid	74.87	66.74
Solyc01g097950.2.1	Tomato	cytosol	55.18	65.94
Solyc01g097930.2.1	Tomato	cytosol	53.89	64.4
Solyc01g097920.2.1	Tomato	cytosol, plastid	58.55	63.48
Solyc10g012370.2.1	Tomato	mitochondrion	51.81	56.98
Solyc01g094790.2.1	Tomato	plastid	50.78	54.9
Solyc04g058120.1.1	Tomato	mitochondrion	11.92	50.55
Solyc07g065470.2.1	Tomato	peroxisome, plasma membrane	28.76	26.37

Protein Annotations

KEGG:00270+2.5.1.47	KEGG:00920+2.5.1.47	Gene3D:3.40.50.1100	MapMan:4.1.4.2.2	InterPro:CysK	InterPro:Cys_synth
GO:GO:0003674	GO:GO:0003824	GO:GO:0004124	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006535	GO:GO:0008150	GO:GO:0008152	GO:GO:0008652
GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0019344	GO:GO:0030170	UniProt:K4CJ67
InterPro:P-phosphate_BS	PFAM:PF00291	InterPro:PLP-dep	ScanProsite:PS00901	PANTHER:PTHR10314	PANTHER:PTHR10314:SF160
SUPFAM:SSF53686	EnsemblPlantsGene:Solyc08g014340.2	EnsemblPlants:Solyc08g014340.2.1	TIGRFAMs:TIGR01136	TIGRFAMs:TIGR01139	InterPro:Trypto_synt_PLP_dependent
UniParc:UPI000276B295	SEG:seg	:	:	:	:

Description

Cysteine synthase [Source:UniProtKB/TrEMBL;Acc:K4CJ67]

Coordinates

chr8:-:4163751..4171214

Molecular Weight (calculated)

40941.6 Da

IEP (calculated)

5.155

GRAVY (calculated)

0.018

Length

386 amino acids

Sequence
(BLAST)

001: MASFINNPLT SLCNTKSEAN NLFKISPLRA QSLGFSKFNG SRKVAFPSVV CKAVSVPTKS STEIEGLNIA EDVTQLIGNT PMVYLNTIAK GCVANIAAKL
101: EIMEPCCSVK DRIGFSMIVD AEEKGLISPG KTVLVEPTSG NTGIGLAFIA ASRGYKLILT MPASMSLERR VILKAFGAEL VLTDPAKGMK GAVSKAEEIL
201: NNTPDAYILQ QFDNPANPKI HYETTGPEIW EDTKGKIDIL VAGIGTGGTI TGTGRFLKEQ NPNIKIIGVE PTESNVLSGG KPGPHKIQGI GAGFIPGNLD
301: QDVMDEVIEI SSDEAVETAK QLALQEGLLV GISSGAAALA AIQVGKRPEN AGKLIGVVFP SYGERYLSSI LFQSIREECE NMKPEL

Best Arabidopsis Sequence Match ( AT3G59760.3 )
(BLAST)

001: MVAMIMASRF NREAKLASQI LSTLLGNRSC YTSMAATSSS ALLLNPLTSS SSSSTLRRFR CSPEISSLSF SSASDFSLAM KRQSRSFADG SERDPSVVCE
101: AVKRETGPDG LNIADNVSQL IGKTPMVYLN SIAKGCVANI AAKLEIMEPC CSVKDRIGYS MVTDAEQKGF ISPGKSVLVE PTSGNTGIGL AFIAASRGYR
201: LILTMPASMS MERRVLLKAF GAELVLTDPA KGMTGAVQKA EEILKNTPDA YMLQQFDNPA NPKIHYETTG PEIWDDTKGK VDIFVAGIGT GGTITGVGRF
301: IKEKNPKTQV IGVEPTESDI LSGGKPGPHK IQGIGAGFIP KNLDQKIMDE VIAISSEEAI ETAKQLALKE GLMVGISSGA AAAAAIKVAK RPENAGKLIA
401: VVFPSFGERY LSTPLFQSIR EEVEKMQPEV

Arabidopsis Description

OASCCysteine synthase [Source:UniProtKB/TrEMBL;Acc:B9DFR6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.