Factsheet for Solyc10g012370.2.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 8

Predictors

GFP

MS/MS

Papers

mitochondrion: 30535734
nucleus: 30535734
plasma membrane: 30535734

plastid: 20363867
extracellular: 29876421

gfp PMID: 30535734 doi

D Liu, J Lu, H Li, J Wang, Y Pei

College of Life Science, Shanxi University, Taiyuan, 030006, China., College of Life Science, Shanxi University, Taiyuan, 030006, China. peiyanxi@sxu.edu.cn., Scientific Instrument Center, Shanxi University, Taiyuan, 030006, China.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400016646	Potato	mitochondrion	97.72	97.72
Solyc01g094790.2.1	Tomato	plastid	83.76	82.35
VIT_15s0046g02300.t01	Wine grape	mitochondrion	86.89	82.21
KRH00797	Soybean	mitochondrion	85.19	80.38
KRH40428	Soybean	mitochondrion	85.19	80.16
KRH74905	Soybean	cytosol	18.23	80.0
VIT_04s0044g00250.t01	Wine grape	mitochondrion	80.91	79.11
AT3G61440.1	Thale cress	mitochondrion	80.63	76.9
Bra007604.1-P	Field mustard	mitochondrion	80.06	76.36
Bra014436.1-P	Field mustard	mitochondrion	80.06	76.36
CDX89116	Canola	mitochondrion	80.06	76.36
CDX71737	Canola	mitochondrion	79.77	76.09
CDY43932	Canola	mitochondrion	79.77	76.09
CDY48919	Canola	endoplasmic reticulum	65.81	73.33
GSMUA_Achr5P19480_001	Banana	mitochondrion	73.5	71.87
Os04t0165700-01	Rice	mitochondrion	73.5	68.44
EES11801	Sorghum	mitochondrion	73.79	67.1
Zm00001d004413_P002	Maize	mitochondrion	72.65	66.75
TraesCS5B01G300800.1	Wheat	mitochondrion	71.79	66.67
TraesCS5A01G300400.1	Wheat	mitochondrion	70.94	65.53
HORVU7Hr1G023500.1	Barley	cytosol	19.66	65.09
Solyc04g058120.1.1	Tomato	mitochondrion	16.24	62.64
Solyc09g082060.2.1	Tomato	cytosol, nucleus, plastid	56.41	60.92
Solyc01g097940.1.1	Tomato	plasma membrane	31.91	57.14
Solyc01g097950.2.1	Tomato	cytosol	51.85	56.35
Solyc01g097930.2.1	Tomato	cytosol	51.0	55.42
HORVU2Hr1G000280.3	Barley	golgi, peroxisome, plastid	71.23	54.82
Solyc01g097920.2.1	Tomato	cytosol, plastid	52.71	51.97
Solyc08g014340.2.1	Tomato	plastid	56.98	51.81
CDY68838	Canola	mitochondrion	15.1	38.97
Solyc07g065470.2.1	Tomato	peroxisome, plasma membrane	31.34	26.13

Protein Annotations

KEGG:00270+2.5.1.47	KEGG:00460+4.4.1.9	KEGG:00920+2.5.1.47	Gene3D:3.40.50.1100	MapMan:50.2.5	InterPro:CAS
InterPro:CysK	InterPro:Cys_synth	GO:GO:0003674	GO:GO:0003824	GO:GO:0004124	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006535
GO:GO:0008150	GO:GO:0008152	GO:GO:0008652	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740
GO:GO:0019344	GO:GO:0019499	GO:GO:0030170	GO:GO:0050017	UniProt:K4CYL4	InterPro:P-phosphate_BS
PFAM:PF00291	InterPro:PLP-dep	ScanProsite:PS00901	PANTHER:PTHR10314	PANTHER:PTHR10314:SF80	SUPFAM:SSF53686
EnsemblPlantsGene:Solyc10g012370.2	EnsemblPlants:Solyc10g012370.2.1	TIGRFAMs:TIGR01136	TIGRFAMs:TIGR01139	InterPro:Trypto_synt_PLP_dependent	UniParc:UPI000276C383
SEG:seg	:	:	:	:	:

Description

Cysteine synthase [Source:UniProtKB/TrEMBL;Acc:K4CYL4]

Coordinates

chr10:-:5012119..5020595

Molecular Weight (calculated)

38239.5 Da

IEP (calculated)

8.773

GRAVY (calculated)

-0.208

Length

351 amino acids

Sequence
(BLAST)

001: MASLVRRRFY SSEASFVQRL RDLPKYLPGT KIKTQVSQLI GKTPLVYLNK VSEGCGAYIA VKQEMMQPTS SIKDRPAFAM INDAEKKGLI TPGKTTLIEP
101: TSGNMGISMA FMAAMKGYKM ILTMPSYTSL ERRVTMRAFG ADLVITDPTK GMGGTIKKAY DLLESTPNAY MLQQFSNPAN TQVHFETTGP EIWEDTQGNV
201: DIFVMGIGSG GTVSGVGQYL KSKNPNVKIY GIEPAESNVL NGGKPGPHEI TGNGVGFKPD ILDMDVMEEV LMVSSEESVN MARELALKEG LMVGISSGAN
301: TVAALRLANR PENKGKLIVT IHPSFGERYL SSVLYEDLRK EAQNMQPVSV D

Best Arabidopsis Sequence Match ( AT3G61440.1 )
(BLAST)

001: MASVSRRLLR RETIPCFSHT VRKLFSTVGS PSFAQRLRDL PKDFPSTNAK RDASLLIGKT PLVFLNKVTE GCEAYVAAKQ EHFQPTCSIK DRPAIAMIAD
101: AEKKKLIIPG KTTLIEPTSG NMGISLAFMA AMKGYRIIMT MPSYTSLERR VTMRSFGAEL VLTDPAKGMG GTVKKAYDLL DSTPDAFMCQ QFANPANTQI
201: HFDTTGPEIW EDTLGNVDIF VMGIGSGGTV SGVGRYLKSK NPNVKIYGVE PAESNILNGG KPGPHAITGN GVGFKPEILD MDVMESVLEV SSEDAIKMAR
301: ELALKEGLMV GISSGANTVA AIRLAKMPEN KGKLIVTIHA SFGERYLSSV LFDELRKEAE EMKPVSVD

Arabidopsis Description

CYSC1Bifunctional L-3-cyanoalanine synthase/cysteine synthase C1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9S757]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.