Factsheet for Solyc01g097920.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

cytosol 4
plastid 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc12g013560.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G28020.1	Solyc12g013560.1.1	AT5G54390.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g097950.2.1	Tomato	cytosol	74.72	82.35
Solyc01g097940.1.1	Tomato	plasma membrane	44.38	80.61
Solyc01g097930.2.1	Tomato	cytosol	73.03	80.5
VIT_14s0030g01520.t01	Wine grape	cytosol	69.38	76.47
KRH13764	Soybean	cytosol	65.73	72.9
GSMUA_Achr3P30900_001	Banana	cytosol, unclear	66.01	72.31
Solyc09g082060.2.1	Tomato	cytosol, nucleus, plastid	65.17	71.38
KRH34052	Soybean	cytosol	64.89	71.3
KRG92757	Soybean	cytosol	64.61	71.21
Zm00001d031136_P003	Maize	plasma membrane	64.89	71.08
KXG24064	Sorghum	cytosol	64.61	70.77
GSMUA_Achr11P...	Banana	cytosol	64.33	70.68
CDY00007	Canola	cytosol	64.04	70.59
TraesCS5D01G027600.1	Wheat	cytosol, golgi	64.33	70.46
KRH34037	Soybean	cytosol	63.48	69.97
CDY19703	Canola	cytosol	63.48	69.97
CDY50768	Canola	cytosol	62.92	69.78
GSMUA_Achr9P25760_001	Banana	cytosol	63.48	69.75
CDY41911	Canola	cytosol	62.64	69.47
CDY52498	Canola	cytosol	62.92	69.35
CDY05586	Canola	cytosol	62.64	69.04
VIT_14s0030g01550.t01	Wine grape	cytosol	66.29	69.01
GSMUA_Achr4P21350_001	Banana	cytosol	62.92	68.92
AT5G28030.2	Thale cress	cytosol	62.36	68.73
CDY69239	Canola	cytosol	61.8	68.54
AT5G28020.1	Thale cress	cytosol	62.08	68.42
Bra036115.1-P	Field mustard	cytosol	62.08	68.42
CDX74160	Canola	cytosol	61.52	68.22
AT3G04940.1	Thale cress	cytosol	61.8	67.9
KRH43690	Soybean	cytosol	44.38	67.81
Bra009985.1-P	Field mustard	cytosol	52.25	67.15
CDX86187	Canola	cytosol	57.3	67.11
CDY41913	Canola	cytosol	57.02	66.78
CDX80680	Canola	cytosol	57.02	66.78
Os12t0625000-01	Rice	plasma membrane	64.33	65.99
TraesCS2B01G316800.1	Wheat	cytosol	60.39	65.75
TraesCS2A01G300600.1	Wheat	cytosol	60.11	65.44
HORVU3Hr1G040910.1	Barley	mitochondrion	6.18	64.71
Bra036114.1-P	Field mustard	cytosol	62.08	64.62
HORVU2Hr1G074630.2	Barley	cytosol	51.97	63.79
CDY19702	Canola	mitochondrion	62.08	62.96
CDY00008	Canola	mitochondrion	61.52	62.39
Zm00001d003717_P001	Maize	cytosol	60.96	61.65
TraesCS2D01G298600.2	Wheat	cytosol	60.96	60.61
KXG26295	Sorghum	cytosol	59.55	60.57
Solyc08g014340.2.1	Tomato	plastid	63.48	58.55
KRG92761	Soybean	cytosol	52.81	56.8
VIT_14s0030g01490.t01	Wine grape	cytosol	69.1	56.04
Bra001131.1-P	Field mustard	mitochondrion	62.08	55.25
TraesCS5A01G022200.1	Wheat	plastid	64.33	53.5
HORVU5Hr1G015070.1	Barley	extracellular	10.11	52.94
Solyc10g012370.2.1	Tomato	mitochondrion	51.97	52.71
HORVU5Hr1G005980.2	Barley	plastid	64.04	52.17
TraesCS5B01G018700.3	Wheat	plastid	64.33	52.16
Bra020605.1-P	Field mustard	mitochondrion	61.52	50.46
Solyc01g094790.2.1	Tomato	plastid	50.0	49.86
CDY41915	Canola	cytosol	8.43	48.39
HORVU5Hr1G082120.2	Barley	mitochondrion, plastid	25.0	47.59
Bra040417.1-P	Field mustard	cytosol	40.73	46.47
Solyc04g058120.1.1	Tomato	mitochondrion	10.39	40.66
HORVU1Hr1G031220.3	Barley	plastid	35.39	30.96
Solyc07g065470.2.1	Tomato	peroxisome, plasma membrane	32.87	27.79

Protein Annotations

KEGG:00270+2.5.1.47	KEGG:00920+2.5.1.47	Gene3D:3.40.50.1100	MapMan:50.2.5	InterPro:CysK	InterPro:Cys_synth
GO:GO:0003674	GO:GO:0003824	GO:GO:0004124	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006535	GO:GO:0008150	GO:GO:0008152	GO:GO:0008652
GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0019344	GO:GO:0030170	UniProt:K4B0H9
InterPro:P-phosphate_BS	PFAM:PF00291	InterPro:PLP-dep	ScanProsite:PS00901	PANTHER:PTHR10314	PANTHER:PTHR10314:SF97
SUPFAM:SSF53686	EnsemblPlantsGene:Solyc01g097920.2	EnsemblPlants:Solyc01g097920.2.1	TIGRFAMs:TIGR01136	TIGRFAMs:TIGR01139	InterPro:Trypto_synt_PLP_dependent
UniParc:UPI00027683E0	SEG:seg	:	:	:	:

Description

Cysteine synthase [Source:UniProtKB/TrEMBL;Acc:K4B0H9]

Coordinates

chr1:+:88597982..88604836

Molecular Weight (calculated)

38390.8 Da

IEP (calculated)

6.955

GRAVY (calculated)

0.027

Length

356 amino acids

Sequence
(BLAST)

001: MEEKDDIAKD VTELIGNTPM VYLNKIVEGC AAQIAAKLET MEPCASVKDR IAYSMIKDAE DKGLITPGKS VLLEVTSGNT GIGLAFVAAA RGYKLVIVMP
101: SSYSLERRIV LKALGAELYI TDPAKGLDGL LQKAQEILDR TPNSHFFRQF ENPANPKIHY ETTGPEIWKS TGGKVDIFIA GIGTGGTVTG AGRFLKEKNP
201: EIKVYGVEPA ENAILNGGQL GPHKIQGIGA GFIPAVLDQS ILDGVLQVSS NEAIEMTKVL ALKEGLLVGI SSGAAAAAAV QVAKKPENAG KLIAVIFPSF
301: GERYLSTVLF DSIREEVMNM TFENNMAHMT FRKTLIASPR RAYLVLDRDY VMRIKS

Best Arabidopsis Sequence Match ( AT3G59760.1 )
(BLAST)

001: MVAMIMASRF NREAKLASQI LSTLLGNRSC YTSMAATSSS ALLLNPLTSS SSSSTLRRFR CSPEISSLSF SSASDFSLAM KRQSRSFADG SERDPSVVCE
101: AVKRETGPDG LNIADNVSQL IGKTPMVYLN SIAKGCVANI AAKLEIMEPC CSVKDRIGYS MVTDAEQKGF ISPGKSVLVE PTSGNTGIGL AFIAASRGYR
201: LILTMPASMS MERRVLLKAF GAELVLTDPA KGMTGAVQKA EEILKNTPDA YMLQQFDNPA NPKIHYETTG PEIWDDTKGK VDIFVAGIGT GGTITGVGRF
301: IKEKNPKTQV IGVEPTESDI LSGGKPGPHK IQGIGAGFIP KNLDQKIMDE VIAISSEEAI ETAKQLALKE GLMVGISSGA AAAAAIKVAK RPENAGKLIA
401: VVFPSFGERY LSTPLFQSIR EEVEKMQPER VSG

Arabidopsis Description

OASCCysteine synthase [Source:UniProtKB/TrEMBL;Acc:B9DFR6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.