Factsheet for GSMUA_Achr3P30900_001

Subcellular Localization

min:

: max

Winner_takes_all: unclear, cytosol

Predictor Summary:

cytosol 4
plastid 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

unclear: 20177697

msms PMID: 20177697 doi

A Vertommen, B Panis, R Swennen, SC Carpentier

Division of Crop Biotechnics, Department of Biosystems, K U Leuven, Leuven, Belgium. Annelies.vertommen@biw.kuleuven.be

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr8P07520_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G28020.1	GSMUA_Achr11P...	AT5G54390.1	21798944
AT5G28020.1	GSMUA_Achr8P07520_001	AT5G54390.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G040910.1	Barley	mitochondrion	9.54	91.18
GSMUA_Achr4P21350_001	Banana	cytosol	87.08	87.08
TraesCS5D01G027600.1	Wheat	cytosol, golgi	86.46	86.46
Zm00001d031136_P003	Maize	plasma membrane	85.85	85.85
GSMUA_Achr11P...	Banana	cytosol	85.54	85.8
KXG24064	Sorghum	cytosol	85.54	85.54
GSMUA_Achr9P25760_001	Banana	cytosol	84.92	85.19
Solyc09g082060.2.1	Tomato	cytosol, nucleus, plastid	81.85	81.85
PGSC0003DMT400082113	Potato	cytosol	81.85	81.85
KRH27640	Soybean	cytosol	81.85	81.85
KRH68699	Soybean	cytosol	81.23	81.23
KRH77854	Soybean	cytosol	18.46	81.08
KRG96937	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	80.62	80.62
AT3G22460.1	Thale cress	cytosol	61.85	80.4
Os12t0625000-01	Rice	plasma membrane	85.23	79.83
Bra039708.1-P	Field mustard	cytosol	78.15	78.88
CDY68436	Canola	cytosol	78.15	78.88
CDY29778	Canola	cytosol, peroxisome, plastid	73.54	78.88
KRG91325	Soybean	cytosol, mitochondrion, nucleus	78.77	78.77
CDY42795	Canola	cytosol	77.85	78.57
AT4G14880.5	Thale cress	cytosol	77.54	78.26
Bra036910.1-P	Field mustard	plastid	76.62	78.06
TraesCS2B01G316800.1	Wheat	cytosol	77.85	77.37
CDY09039	Canola	cytosol	73.85	76.92
VIT_14s0030g01520.t01	Wine grape	cytosol	76.0	76.47
TraesCS2A01G300600.1	Wheat	cytosol	76.62	76.15
HORVU2Hr1G074630.2	Barley	cytosol	66.77	74.83
KRH35519	Soybean	cytosol	70.15	74.75
KRH13764	Soybean	cytosol	72.0	72.9
KRG92757	Soybean	cytosol	71.69	72.14
HORVU5Hr1G015070.1	Barley	extracellular	15.08	72.06
KRH34052	Soybean	cytosol	71.08	71.3
VIT_14s0030g01550.t01	Wine grape	cytosol	74.46	70.76
CDY69239	Canola	cytosol	69.54	70.41
CDY41911	Canola	cytosol	69.54	70.41
KRH34037	Soybean	cytosol	69.85	70.28
AT5G28020.1	Thale cress	cytosol	69.85	70.28
TraesCS2D01G298600.2	Wheat	cytosol	77.23	70.11
CDY50768	Canola	cytosol	69.23	70.09
AT3G04940.1	Thale cress	cytosol	69.85	70.06
Bra036115.1-P	Field mustard	cytosol	69.54	69.97
CDY52498	Canola	cytosol	69.23	69.66
CDX74160	Canola	cytosol	68.62	69.47
CDY00007	Canola	cytosol	68.62	69.04
CDY05586	Canola	cytosol	68.62	69.04
CDY19703	Canola	cytosol	68.31	68.73
CDY41913	Canola	cytosol	64.0	68.42
KXG26295	Sorghum	cytosol	73.54	68.29
Bra009985.1-P	Field mustard	cytosol	58.15	68.23
Zm00001d003717_P001	Maize	cytosol	73.85	68.18
AT5G28030.2	Thale cress	cytosol	67.69	68.11
Solyc01g097950.2.1	Tomato	cytosol	67.69	68.11
CDX86187	Canola	cytosol	63.69	68.09
KRH43690	Soybean	cytosol	48.62	67.81
CDX80680	Canola	cytosol	63.38	67.76
Solyc01g097940.1.1	Tomato	plasma membrane	40.31	66.84
Solyc01g097920.2.1	Tomato	cytosol, plastid	72.31	66.01
Solyc01g097930.2.1	Tomato	cytosol	64.92	65.33
TraesCS5A01G022200.1	Wheat	plastid	85.85	65.19
CDY19702	Canola	mitochondrion	69.54	64.39
CDY00008	Canola	mitochondrion	68.92	63.82
TraesCS5B01G018700.3	Wheat	plastid	86.15	63.78
HORVU5Hr1G005980.2	Barley	plastid	85.23	63.39
Bra036114.1-P	Field mustard	cytosol	66.46	63.16
GSMUA_Achr9P02430_001	Banana	plastid	72.62	62.11
GSMUA_Achr5P17120_001	Banana	plastid	73.23	61.98
VIT_14s0030g01540.t01	Wine grape	cytosol, mitochondrion, plastid	73.85	61.54
HORVU5Hr1G082120.2	Barley	mitochondrion, plastid	34.77	60.43
KRG92761	Soybean	cytosol	58.15	57.1
Bra001131.1-P	Field mustard	mitochondrion	69.54	56.5
VIT_14s0030g01490.t01	Wine grape	cytosol	75.69	56.04
GSMUA_Achr5P19480_001	Banana	mitochondrion	59.69	54.04
GSMUA_Achr2P16640_001	Banana	cytosol	55.08	52.65
CDY41915	Canola	cytosol	9.85	51.61
Bra020605.1-P	Field mustard	mitochondrion	68.62	51.38
GSMUA_Achr8P00260_001	Banana	mitochondrion	62.77	46.58
Bra040417.1-P	Field mustard	cytosol	44.31	46.15
VIT_14s0030g01560.t01	Wine grape	endoplasmic reticulum, extracellular	84.62	39.23
HORVU1Hr1G031220.3	Barley	plastid	47.38	37.84
GSMUA_Achr3P26040_001	Banana	endoplasmic reticulum	33.85	25.46

Protein Annotations

KEGG:00270+2.5.1.47	KEGG:00920+2.5.1.47	Gene3D:3.40.50.1100	MapMan:4.1.4.2.2	InterPro:CysK	InterPro:Cys_synth
GO:GO:0003674	GO:GO:0003824	GO:GO:0004124	GO:GO:0006535	GO:GO:0008150	GO:GO:0008152
GO:GO:0008652	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0019344	EnsemblPlantsGene:GSMUA_Achr3G30900_001
EnsemblPlants:GSMUA_Achr3P30900_001	EnsemblPlants:GSMUA_Achr3T30900_001	UniProt:M0SJA4	InterPro:P-phosphate_BS	PFAM:PF00291	InterPro:PLP-dep
ScanProsite:PS00901	PANTHER:PTHR10314	PANTHER:PTHR10314:SF160	SUPFAM:SSF53686	TIGRFAMs:TIGR01136	TIGRFAMs:TIGR01139
InterPro:Trypto_synt_PLP_dependent	UniParc:UPI0002963BB9	SEG:seg	:	:	:

Description

Cysteine synthase [Source:GMGC_GENE;Acc:GSMUA_Achr3G30900_001]

Coordinates

chr3:-:29477926..29482686

Molecular Weight (calculated)

34362.0 Da

IEP (calculated)

5.954

GRAVY (calculated)

0.102

Length

325 amino acids

Sequence
(BLAST)

001: MGESSPMIAK DVTELIGRTP LVYLNKVVNG CGARIAAKLE MMEPCSSVKD RIGYSMIADA EEKGLITPGK SVLIEPTSGN TGIGLAFMAA AKGYKLVLTM
101: PASMSIERRI ILKAFGAELV LTDPVLGMKG AVEKAEELAA KTPNSYILQQ FENPSNPKIH YETTGPEIWK GTAGRVDILV SGIGTGGTIT GTGRFLKEQN
201: PNIKLYGVEP AESAVLSGGR PGAHKIQGIG AGFIPGVLDV NLVDEVIQIS SNESIEMAKL LALKEGLLVG ISSGAAAAAA IRVAQRPENE GKLIVVVFPS
301: FGERYLSSVL YQSIKKEAEN MVFEP

Best Arabidopsis Sequence Match ( AT4G14880.5 )
(BLAST)

001: MASRIAKDVT ELIGNTPLVY LNNVAEGCVG RVAAKLEMME PCSSVKDRIG FSMISDAEKK GLIKPGESVL IEPTSGNTGV GLAFTAAAKG YKLIITMPAS
101: MSTERRIILL AFGVELVLTD PAKGMKGAIA KAEEILAKTP NGYMLQQFEN PANPKIHYET TGPEIWKGTG GKIDGFVSGI GTGGTITGAG KYLKEQNANV
201: KLYGVEPVES AILSGGKPGP HKIQGIGAGF IPSVLNVDLI DEVVQVSSDE SIDMARQLAL KEGLLVGISS GAAAAAAIKL AQRPENAGKL FVAIFPSFGE
301: RYLSTVLFDA TRKEAEAMTF EA

Arabidopsis Description

OASA1Cysteine synthase 1 [Source:UniProtKB/Swiss-Prot;Acc:P47998]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.