CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH26049
KRH55364

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G28020.1	KRH26049	AT5G54390.1	21798944
AT5G28020.1	KRH55364	AT5G54390.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G040910.1	Barley	mitochondrion	10.3	70.59
KRH13764	Soybean	cytosol	90.13	65.42
KRH77854	Soybean	cytosol	18.45	58.11
HORVU5Hr1G015070.1	Barley	extracellular	15.45	52.94
KRH34052	Soybean	cytosol	73.39	52.78
KRG92757	Soybean	cytosol	72.96	52.63
HORVU2Hr1G074630.2	Barley	cytosol	64.81	52.07
KRH34037	Soybean	cytosol	71.24	51.39
VIT_14s0030g01520.t01	Wine grape	cytosol	69.96	50.46
KRG92761	Soybean	cytosol	71.67	50.45
KRG91325	Soybean	cytosol, mitochondrion, nucleus	69.53	49.85
AT5G28020.1	Thale cress	cytosol	69.1	49.85
GSMUA_Achr9P25760_001	Banana	cytosol	69.1	49.69
KRG96937	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	69.1	49.54
KRH27640	Soybean	cytosol	69.1	49.54
KRH68699	Soybean	cytosol	68.67	49.23
TraesCS5D01G027600.1	Wheat	cytosol, golgi	68.67	49.23
AT5G28030.2	Thale cress	cytosol	68.24	49.23
CDY69239	Canola	cytosol	67.81	49.22
GSMUA_Achr11P...	Banana	cytosol	68.24	49.07
Bra036115.1-P	Field mustard	cytosol	67.81	48.92
CDY52498	Canola	cytosol	67.81	48.92
GSMUA_Achr3P30900_001	Banana	cytosol, unclear	67.81	48.62
GSMUA_Achr4P21350_001	Banana	cytosol	67.81	48.62
CDY05586	Canola	cytosol	67.38	48.61
CDY00007	Canola	cytosol	67.38	48.61
CDY50768	Canola	cytosol	66.95	48.6
VIT_14s0030g01550.t01	Wine grape	cytosol	71.24	48.54
CDX86187	Canola	cytosol	63.09	48.36
CDX80680	Canola	cytosol	63.09	48.36
KXG24064	Sorghum	cytosol	67.38	48.31
CDY19703	Canola	cytosol	66.95	48.3
CDX74160	Canola	cytosol	66.52	48.29
Zm00001d031136_P003	Maize	plasma membrane	66.95	48.0
CDY41911	Canola	cytosol	66.09	47.98
Os12t0625000-01	Rice	plasma membrane	71.24	47.84
AT3G04940.1	Thale cress	cytosol	64.81	46.6
KRH35519	Soybean	cytosol	60.94	46.56
TraesCS2B01G316800.1	Wheat	cytosol	63.95	45.57
CDY41913	Canola	cytosol	59.23	45.39
TraesCS2A01G300600.1	Wheat	cytosol	63.52	45.26
CDY19702	Canola	mitochondrion	67.81	45.01
KRH74905	Soybean	cytosol	15.45	45.0
Solyc01g097950.2.1	Tomato	cytosol	62.23	44.89
Bra009985.1-P	Field mustard	cytosol	53.22	44.77
KXG26295	Sorghum	cytosol	66.95	44.57
CDY00008	Canola	mitochondrion	66.95	44.44
Solyc01g097920.2.1	Tomato	cytosol, plastid	67.81	44.38
Solyc01g097940.1.1	Tomato	plasma membrane	36.91	43.88
Bra036114.1-P	Field mustard	cytosol	63.95	43.57
Zm00001d003717_P001	Maize	cytosol	65.24	43.18
Solyc01g097930.2.1	Tomato	cytosol	59.23	42.72
HORVU5Hr1G082120.2	Barley	mitochondrion, plastid	33.91	42.25
TraesCS2D01G298600.2	Wheat	cytosol	64.38	41.9
KRH50190	Soybean	nucleus, plastid	65.67	39.33
Bra001131.1-P	Field mustard	mitochondrion	66.95	39.0
KRH71273	Soybean	nucleus, plastid	64.81	38.32
TraesCS5A01G022200.1	Wheat	plastid	67.81	36.92
TraesCS5B01G018700.3	Wheat	plastid	69.53	36.9
VIT_14s0030g01490.t01	Wine grape	cytosol	69.53	36.9
HORVU5Hr1G005980.2	Barley	plastid	68.67	36.61
KRG94935	Soybean	nucleus	57.08	35.85
KRH64961	Soybean	nucleus, plastid	57.08	35.56
Bra020605.1-P	Field mustard	mitochondrion	66.09	35.48
KRH40428	Soybean	mitochondrion	54.51	34.05
KRH00797	Soybean	mitochondrion	54.08	33.87
HORVU1Hr1G031220.3	Barley	plastid	48.07	27.52
Bra040417.1-P	Field mustard	cytosol	35.62	26.6
CDY41915	Canola	cytosol	6.44	24.19
KRH14231	Soybean	mitochondrion	36.05	19.76
KRH73904	Soybean	cytosol	30.04	16.59

Protein Annotations

Gene3D:3.40.50.1100	MapMan:50.2.5	EMBL:ACUP02004883	EnsemblPlantsGene:GLYMA_08G164600	GO:GO:0003674	GO:GO:0003824
GO:GO:0004124	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006535	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740
GO:GO:0030170	UniProt:K7L749	EnsemblPlants:KRH43690	ProteinID:KRH43690	ProteinID:KRH43690.1	InterPro:P-phosphate_BS
PFAM:PF00291	InterPro:PLP-dep	ScanProsite:PS00901	PANTHER:PTHR10314	PANTHER:PTHR10314:SF97	SUPFAM:SSF53686
InterPro:Trypto_synt_PLP_dependent	UniParc:UPI0002959C0F	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr8:-:12962602..12964895

Molecular Weight (calculated)

24669.1 Da

IEP (calculated)

5.127

GRAVY (calculated)

0.098

Length

233 amino acids

Sequence
(BLAST)

001: MYKECAIKQD VTELIGNTPL CVACIAAKLE SMEPCSSVKD RIALSMIEDA EDNGLITPGM TVLVETTGGN TGIGLTFIAA LKGYRLILAM PALMSLERRI
101: VLRALGAELH LTDPAMGFRS SLQKAEELLR ETCDAFMSHQ FENPANPKIH YETTGPEIWR DSGEKVDALV AGIGTGGTIT GAGKFLKERN SKIKVYGVEP
201: VESAVLSGGQ PGGHLIQGIG AGIVPAVLDV KSA

Best Arabidopsis Sequence Match ( AT3G04940.1 )
(BLAST)

001: MEEDRCSIKD DATQLIGNTP MVYLNNIVDG CVARIAAKLE MMEPCSSVKE RIAYGMIKDA EDKGLITPGK STLIEATSGN TGIGLAFIGA AKGYKVVLTM
101: PSSMSLERKI ILLALGAEVH LTDPSKGVQG IIDKAEEICS KNPDSIMLEQ FKNPSNPQTH YRTTGPEIWR DSAGEVDILV AGVGTGGTLS GSGRFLKEKN
201: KDFKVYGVEP TESAVISGGK PGTHLIQGIG AGLIPDNLDF NVLDEVIQVT SVEAIETAKL LALKEGLLVG ISSGAAAAAA IKVAKRPENA GKLIVVIFPS
301: GGERYLSTSL FESVRHEAEN LPIQ

Arabidopsis Description

CYSD1Bifunctional L-3-cyanoalanine synthase/cysteine synthase D1 [Source:UniProtKB/Swiss-Prot;Acc:Q9S6Z7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.