CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY18326
CDY42446
CDY48649
CDY66135

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G28020.1	CDY18326	AT5G54390.1	21798944
AT5G28020.1	CDY42446	AT5G54390.1	21798944
AT5G28020.1	CDY48649	AT5G54390.1	21798944
AT5G28020.1	CDY66135	AT5G54390.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY19703	Canola	cytosol	99.07	99.07
Bra036114.1-P	Field mustard	cytosol	95.98	90.64
CDY52498	Canola	cytosol	90.4	90.4
CDY05586	Canola	cytosol	89.16	89.16
CDX86187	Canola	cytosol	83.59	88.82
CDX80680	Canola	cytosol	82.97	88.16
AT5G28020.1	Thale cress	cytosol	86.38	86.38
CDY69239	Canola	cytosol	77.09	77.57
CDY19702	Canola	mitochondrion	84.21	77.49
CDX74160	Canola	cytosol	76.78	77.26
CDY41913	Canola	cytosol	72.45	76.97
CDY00008	Canola	mitochondrion	82.97	76.35
CDY50768	Canola	cytosol	74.92	75.39
CDY41911	Canola	cytosol	74.92	75.39
KRH13764	Soybean	cytosol	70.9	71.34
VIT_14s0030g01520.t01	Wine grape	cytosol	69.97	69.97
KRG92757	Soybean	cytosol	69.66	69.66
KRH34052	Soybean	cytosol	69.04	68.83
GSMUA_Achr3P30900_001	Banana	cytosol, unclear	69.04	68.62
GSMUA_Achr11P...	Banana	cytosol	67.8	67.59
KRH34037	Soybean	cytosol	67.49	67.49
KRH43690	Soybean	cytosol	48.61	67.38
Zm00001d031136_P003	Maize	plasma membrane	67.49	67.08
KXG24064	Sorghum	cytosol	67.18	66.77
GSMUA_Achr9P25760_001	Banana	cytosol	66.56	66.36
TraesCS5D01G027600.1	Wheat	cytosol, golgi	66.56	66.15
CDY68436	Canola	cytosol	65.63	65.84
Solyc01g097940.1.1	Tomato	plasma membrane	39.94	65.82
CDY29778	Canola	cytosol, peroxisome, plastid	61.61	65.68
Solyc01g097950.2.1	Tomato	cytosol	65.63	65.63
GSMUA_Achr4P21350_001	Banana	cytosol	65.94	65.54
CDY42795	Canola	cytosol	65.33	65.53
CDY09039	Canola	cytosol	62.85	65.06
HORVU3Hr1G040910.1	Barley	mitochondrion	6.81	64.71
CDY41915	Canola	cytosol	12.38	64.52
Solyc01g097930.2.1	Tomato	cytosol	64.09	64.09
Solyc01g097920.2.1	Tomato	cytosol, plastid	70.59	64.04
VIT_14s0030g01550.t01	Wine grape	cytosol	67.8	64.04
Os12t0625000-01	Rice	plasma membrane	66.56	61.96
TraesCS2B01G316800.1	Wheat	cytosol	62.54	61.77
TraesCS2A01G300600.1	Wheat	cytosol	62.23	61.47
HORVU2Hr1G074630.2	Barley	cytosol	52.94	58.97
TraesCS2D01G298600.2	Wheat	cytosol	62.54	56.42
KXG26295	Sorghum	cytosol	60.99	56.29
Zm00001d003717_P001	Maize	cytosol	60.68	55.68
CDY23400	Canola	plastid	66.87	55.53
CDY30438	Canola	plastid	66.56	55.27
CDY17914	Canola	plastid	66.87	55.1
KRG92761	Soybean	cytosol	56.35	54.98
CDX79804	Canola	plastid	66.87	54.55
HORVU5Hr1G015070.1	Barley	extracellular	10.84	51.47
CDY45790	Canola	plastid	67.8	51.29
CDX89032	Canola	plastid	67.8	51.05
VIT_14s0030g01490.t01	Wine grape	cytosol	69.35	51.03
TraesCS5A01G022200.1	Wheat	plastid	65.94	49.77
TraesCS5B01G018700.3	Wheat	plastid	66.87	49.2
HORVU5Hr1G005980.2	Barley	plastid	65.94	48.74
CDY29946	Canola	plastid	57.28	47.19
CDX89116	Canola	mitochondrion	53.25	46.74
CDX71737	Canola	mitochondrion	53.25	46.74
CDY21176	Canola	plastid	56.66	46.56
CDY43932	Canola	mitochondrion	52.94	46.47
CDY48919	Canola	endoplasmic reticulum	43.96	45.08
HORVU5Hr1G082120.2	Barley	mitochondrion, plastid	25.39	43.85
CDY68838	Canola	mitochondrion	14.86	35.29
HORVU1Hr1G031220.3	Barley	plastid	37.15	29.48
CDY53756	Canola	endoplasmic reticulum	33.44	24.66
CDY52906	Canola	plastid	32.82	24.54

Protein Annotations

KEGG:00270+2.5.1.47	KEGG:00920+2.5.1.47	Gene3D:3.40.50.1100	MapMan:50.2.5	GO:A0A078EG05	EnsemblPlants:CDY00007
ProteinID:CDY00007	ProteinID:CDY00007.1	InterPro:CysK	InterPro:Cys_synth	GO:GO:0003674	GO:GO:0003824
GO:GO:0004124	GO:GO:0006535	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016740	EnsemblPlantsGene:GSBRNA2T00109481001	InterPro:P-phosphate_BS	PFAM:PF00291	InterPro:PLP-dep	ScanProsite:PS00901
PANTHER:PTHR10314	PANTHER:PTHR10314:SF97	MetaCyc:PWY-6936	SUPFAM:SSF53686	TIGRFAMs:TIGR01136	TIGRFAMs:TIGR01139
InterPro:Trypto_synt_PLP_dependent	UniPathway:UPA00136	UniParc:UPI0004EC97FA	SEG:seg	:	:

Description

BnaC09g02940D

Coordinates

chrLK031916:-:204290..206414

Molecular Weight (calculated)

34349.0 Da

IEP (calculated)

5.004

GRAVY (calculated)

0.088

Length

323 amino acids

Sequence
(BLAST)

001: MEDGCMIKKD VTELIGYTPM VYLNRIVDGC VARIAAKLEM MQPCSSVKDR IAYSMIKDAE DKGLIKPGES TLIEPTAGNT GIGLACIGAA RGYKVTLLMP
101: STMSLERRII LKALGAELHL TDMSIGIKGL LEKTEEILNK TPGGFVPQQF ENPANPEIHY QTTGPEIWRD SAGKVDIFIA GVGTGGTVTG VGRFLKEMNK
201: DIKVFAVEPT ESPVLSGGEP GRHLIQGIGA GIIPANLDLS IVDEIIQVTG EEAIETAKLL ALKEGLLVGI SSGAAAAAAL KVAKRPENAG KLIAVLFPSG
301: GERYLSTKLF DSVRFEAENL PVE

Best Arabidopsis Sequence Match ( AT5G28020.2 )
(BLAST)

001: MEDRCLIKND ITELIGNTPM VYLNNVVDGC VARIAAKLEM MEPCSSVKDR IAYSMIKDAE DKGLITPGKS TLIEPTAGNT GIGLACMGAA RGYKVILVMP
101: STMSLERRII LRALGAELHL SDQRIGLKGM LEKTEAILSK TPGGYIPQQF ENPANPEIHY RTTGPEIWRD SAGKVDILVA GVGTGGTATG VGKFLKEQNK
201: DIKVCVVEPV ESPVLSGGQP GPHLIQGIGS GIVPFNLDLT IVDEIIQVAG EEAIETAKLL ALKEGLLVGI SSGAAAAAAL KVAKRPENAG KLIVVVFPSG
301: GERYLSTKLF DSIRYEAENL PIE

Arabidopsis Description

CYSD2Bifunctional L-3-cyanoalanine synthase/cysteine synthase D2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SXS7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.