CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

cytosol 1
extracellular 4
endoplasmic reticulum 5
vacuole 4
plasma membrane 4
golgi 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, mitochondrion, secretory
BaCelLo:	cytosol
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY52906	Canola	plastid	93.38	94.68
AT1G55880.1	Thale cress	endoplasmic reticulum	85.62	89.07
VIT_19s0015g00380.t01	Wine grape	plastid	73.29	76.25
KRH14231	Soybean	mitochondrion	73.06	75.29
PGSC0003DMT400057393	Potato	plastid	71.23	74.29
Solyc07g065470.2.1	Tomato	peroxisome, plasma membrane	71.23	74.11
GSMUA_Achr3P26040_001	Banana	endoplasmic reticulum	68.04	68.98
TraesCS4D01G244300.1	Wheat	plastid	69.41	68.93
TraesCS4B01G245100.1	Wheat	plastid	69.41	68.93
TraesCS4A01G079100.1	Wheat	plastid	68.72	68.56
Os03t0215800-01	Rice	plastid	69.18	67.33
EER95270	Sorghum	plastid	69.63	67.18
KRH73904	Soybean	cytosol	62.33	64.69
HORVU4Hr1G067610.1	Barley	plastid	69.18	64.33
Zm00001d028220_P001	Maize	plastid	69.18	61.84
CDY19703	Canola	cytosol	24.66	33.44
CDY00007	Canola	cytosol	24.66	33.44
CDY68436	Canola	cytosol	24.2	32.92
CDY69239	Canola	cytosol	23.97	32.71
CDY41911	Canola	cytosol	23.97	32.71
CDY42795	Canola	cytosol	23.97	32.61
CDY52498	Canola	cytosol	23.97	32.51
CDX74160	Canola	cytosol	23.74	32.4
CDY50768	Canola	cytosol	23.74	32.4
CDY05586	Canola	cytosol	23.74	32.2
CDY09039	Canola	cytosol	22.37	31.41
CDY41913	Canola	cytosol	21.69	31.25
CDX80680	Canola	cytosol	21.69	31.25
CDY29778	Canola	cytosol, peroxisome, plastid	21.46	31.02
CDX86187	Canola	cytosol	21.46	30.92
CDY19702	Canola	mitochondrion	23.74	29.63
CDY00008	Canola	mitochondrion	23.74	29.63
CDY43932	Canola	mitochondrion	23.06	27.45
CDX89116	Canola	mitochondrion	22.83	27.17
CDX71737	Canola	mitochondrion	22.83	27.17
CDY23400	Canola	plastid	23.74	26.74
CDY30438	Canola	plastid	23.74	26.74
CDY21176	Canola	plastid	23.29	25.95
CDY17914	Canola	plastid	23.06	25.77
CDY29946	Canola	plastid	23.06	25.77
CDX79804	Canola	plastid	23.06	25.51
CDY45790	Canola	plastid	24.66	25.29
CDX89032	Canola	plastid	24.66	25.17
CDY48919	Canola	endoplasmic reticulum	17.81	24.76
CDY41915	Canola	cytosol	3.2	22.58
CDY68838	Canola	mitochondrion	6.62	21.32

Protein Annotations

Gene3D:3.40.50.1100	MapMan:35.1	GO:A0A078IV26	UniProt:A0A078IV26	EnsemblPlants:CDY53756	ProteinID:CDY53756
ProteinID:CDY53756.1	GO:GO:0005575	GO:GO:0006535	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	EnsemblPlantsGene:GSBRNA2T00011341001	InterPro:P-phosphate_BS	PFAM:PF00291
InterPro:PLP-dep	ScanProsite:PS00901	PANTHER:PTHR10314	PANTHER:PTHR10314:SF35	SUPFAM:SSF53686	TMHMM:TMhelix
InterPro:Trypto_synt_PLP_dependent	UniParc:UPI0004EE6CC0	SEG:seg	:	:	:

Description

BnaCnng25480DBnaCnng25480D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IV26]

Coordinates

chrLK033234:+:28573..30793

Molecular Weight (calculated)

47036.6 Da

IEP (calculated)

8.669

GRAVY (calculated)

-0.153

Length

438 amino acids

Sequence
(BLAST)

001: MAPLKITGAV VAAATMVMLS YCYLGFFRFS DKLESCSSSK KKKKTKTKTK KEKLSTRNGL VDAIGNTPLI RINSLSEATG CEILGKCEFL NPGGSVKDRV
101: AVKIIEEALE SGKLFPGGIV TEGSAGSTAI SLATVAPAYG CQCHVVIPDD AAIEKSQIIE ALGATVERVR PVSITHKDHF VNIARRRADE ANDLASSKRR
201: LASGINIAHQ GKTNGCTAEE EKEPSLSSES VTGGFFADQF ENLANYRAHY EGTGPEIWQQ THGNIDAFVA AAGTGGTLAG VSRFLQEKNE KVKCFLIDPP
301: GSGLYNKVTR GVMYTREEAE GRRLKNPFDT ITEGIGINRL TQNFLMAKID GGFRGTDKEA VEMSRFLLKK DGLFVGSSSA MNCVGAVRVA QALGPGHTIV
401: TILCESGMRH LSKFHDPQYL ALYGLTPTAV GLEFLGIK

Best Arabidopsis Sequence Match ( AT1G55880.1 )
(BLAST)

001: MAPVNMTGAV VAAAALLMLT SYSFFFRLSE KKKRKEKLTM RNGLVDAIGN TPLIRINSLS EATGCEILGK CEFLNPGGSV KDRVAVKIIQ EALESGKLFP
101: GGIVTEGSAG STAISLATVA PAYGCKCHVV IPDDAAIEKS QIIEALGASV ERVRPVSITH KDHYVNIARR RADEANELAS KRRLGSETNG IHQEKTNGCT
201: VEEVKEPSLF SDSVTGGFFA DQFENLANYR AHYEGTGPEI WHQTQGNIDA FVAAAGTGGT LAGVSRFLQD KNERVKCFLI DPPGSGLYNK VTRGVMYTRE
301: EAEGRRLKNP FDTITEGIGI NRLTKNFLMA KLDGGFRGTD KEAVEMSRFL LKNDGLFVGS SSAMNCVGAV RVAQTLGPGH TIVTILCDSG MRHLSKFHDP
401: KYLNLYGLSP TAIGLEFLGI K

Arabidopsis Description

At1g55880 [Source:UniProtKB/TrEMBL;Acc:Q6NKY5]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.