Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G55880.1 | KRH22710 | AT3G44590.1 | 21798944 |
| AT1G55880.1 | KRH26594 | AT3G44590.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH14231 | Soybean | mitochondrion | 76.78 | 76.24 |
| AT1G55880.1 | Thale cress | endoplasmic reticulum | 64.45 | 64.61 |
| VIT_19s0015g00380.t01 | Wine grape | plastid | 64.22 | 64.37 |
| Bra038025.1-P | Field mustard | plastid | 65.4 | 63.89 |
| CDY52906 | Canola | plastid | 65.4 | 63.89 |
| PGSC0003DMT400057393 | Potato | plastid | 62.56 | 62.86 |
| CDY53756 | Canola | endoplasmic reticulum | 64.69 | 62.33 |
| Solyc07g065470.2.1 | Tomato | peroxisome, plasma membrane | 62.09 | 62.23 |
| GSMUA_Achr3P26040_001 | Banana | endoplasmic reticulum | 62.09 | 60.65 |
| Os03t0215800-01 | Rice | plastid | 60.9 | 57.11 |
| TraesCS4D01G244300.1 | Wheat | plastid | 59.48 | 56.92 |
| TraesCS4B01G245100.1 | Wheat | plastid | 59.48 | 56.92 |
| EER95270 | Sorghum | plastid | 61.14 | 56.83 |
| TraesCS4A01G079100.1 | Wheat | plastid | 59.0 | 56.72 |
| HORVU4Hr1G067610.1 | Barley | plastid | 60.19 | 53.93 |
| Zm00001d028220_P001 | Maize | plastid | 60.19 | 51.84 |
| KRH77854 | Soybean | cytosol | 5.45 | 31.08 |
| KRH43690 | Soybean | cytosol | 16.59 | 30.04 |
| KRH74905 | Soybean | cytosol | 5.69 | 30.0 |
| KRH27640 | Soybean | cytosol | 22.75 | 29.54 |
| KRG91325 | Soybean | cytosol, mitochondrion, nucleus | 22.51 | 29.23 |
| KRG92757 | Soybean | cytosol | 22.27 | 29.1 |
| KRH35519 | Soybean | cytosol | 20.85 | 28.85 |
| KRH34052 | Soybean | cytosol | 22.04 | 28.7 |
| KRH13764 | Soybean | cytosol | 21.8 | 28.66 |
| KRG96937 | Soybean | cytosol, endoplasmic reticulum, mitochondrion, nucleus | 21.8 | 28.31 |
| KRH34037 | Soybean | cytosol | 20.85 | 27.24 |
| KRH68699 | Soybean | cytosol | 20.85 | 27.08 |
| KRH00797 | Soybean | mitochondrion | 21.33 | 24.19 |
| KRG92761 | Soybean | cytosol | 18.96 | 24.17 |
| KRH40428 | Soybean | mitochondrion | 21.33 | 24.13 |
| KRG94935 | Soybean | nucleus | 20.38 | 23.18 |
| KRH64961 | Soybean | nucleus, plastid | 20.38 | 22.99 |
| KRH50190 | Soybean | nucleus, plastid | 20.14 | 21.85 |
| KRH71273 | Soybean | nucleus, plastid | 19.91 | 21.32 |
Protein Annotations
| EMBL:ACUP02001289 | EnsemblPlants:KRH73904 | EnsemblPlantsGene:GLYMA_02G299900 | Gene3D:3.40.50.1100 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0030170 | InterPro:PLP-dep |
| InterPro:Trypto_synt_PLP_dependent | PANTHER:PTHR10314 | PANTHER:PTHR10314:SF35 | PFAM:PF00291 | ProteinID:KRH73904 | ProteinID:KRH73904.1 |
| SEG:seg | SUPFAM:SSF53686 | UniParc:UPI000294AE14 | UniProt:K7KBM2 | MapMan:35.2 | : |
Description
hypothetical protein
Coordinates
chr2:+:47660319..47662752
Molecular Weight (calculated)
46352.5 Da
IEP (calculated)
8.421
GRAVY (calculated)
-0.268
Length
422 amino acids
Sequence
(BLAST)
(BLAST)
001: MCGSKNIGGQ VTNRDKERTR HWDCGGNKGH KRFELGRKEL RVFFLKKNNK SSKKVDAIGN TPLMIRINSL SAILGKCEFL NPGGSVNDRV AVHIIQEALE
101: SDQLRPDGIV TEGSAGSTAI SIATIAPAYG CRTHVVIPDD AAIEKSQILE ALGATVERVR PVSITHKDHF FALKRTNSQQ LNGKEDTEKI NGYESDGCSY
201: SSLFPEDCQG GFFADQFENL ANFRAHYEGT GPEICSRHWW YCGWCFKVSS GSPQPPFLHV VDVVVLSVKV EKNPNIKCFL VDPPGSGLFN RVTRAVMYTK
301: EEADGRRLKN PFDTITEGIG INRITRNFAM AKLDGAFRGT DREAVEMSRF LLKNDGLFLG SSSAMNCVGA VRVAQAIGPG HTIVTILCDS GMRHLSKFYD
401: AEYLSLLGLT PKATGLELLG IK
101: SDQLRPDGIV TEGSAGSTAI SIATIAPAYG CRTHVVIPDD AAIEKSQILE ALGATVERVR PVSITHKDHF FALKRTNSQQ LNGKEDTEKI NGYESDGCSY
201: SSLFPEDCQG GFFADQFENL ANFRAHYEGT GPEICSRHWW YCGWCFKVSS GSPQPPFLHV VDVVVLSVKV EKNPNIKCFL VDPPGSGLFN RVTRAVMYTK
301: EEADGRRLKN PFDTITEGIG INRITRNFAM AKLDGAFRGT DREAVEMSRF LLKNDGLFLG SSSAMNCVGA VRVAQAIGPG HTIVTILCDS GMRHLSKFYD
401: AEYLSLLGLT PKATGLELLG IK
001: MAPVNMTGAV VAAAALLMLT SYSFFFRLSE KKKRKEKLTM RNGLVDAIGN TPLIRINSLS EATGCEILGK CEFLNPGGSV KDRVAVKIIQ EALESGKLFP
101: GGIVTEGSAG STAISLATVA PAYGCKCHVV IPDDAAIEKS QIIEALGASV ERVRPVSITH KDHYVNIARR RADEANELAS KRRLGSETNG IHQEKTNGCT
201: VEEVKEPSLF SDSVTGGFFA DQFENLANYR AHYEGTGPEI WHQTQGNIDA FVAAAGTGGT LAGVSRFLQD KNERVKCFLI DPPGSGLYNK VTRGVMYTRE
301: EAEGRRLKNP FDTITEGIGI NRLTKNFLMA KLDGGFRGTD KEAVEMSRFL LKNDGLFVGS SSAMNCVGAV RVAQTLGPGH TIVTILCDSG MRHLSKFHDP
401: KYLNLYGLSP TAIGLEFLGI K
101: GGIVTEGSAG STAISLATVA PAYGCKCHVV IPDDAAIEKS QIIEALGASV ERVRPVSITH KDHYVNIARR RADEANELAS KRRLGSETNG IHQEKTNGCT
201: VEEVKEPSLF SDSVTGGFFA DQFENLANYR AHYEGTGPEI WHQTQGNIDA FVAAAGTGGT LAGVSRFLQD KNERVKCFLI DPPGSGLYNK VTRGVMYTRE
301: EAEGRRLKNP FDTITEGIGI NRLTKNFLMA KLDGGFRGTD KEAVEMSRFL LKNDGLFVGS SSAMNCVGAV RVAQTLGPGH TIVTILCDSG MRHLSKFHDP
401: KYLNLYGLSP TAIGLEFLGI K
Arabidopsis Description
At1g55880 [Source:UniProtKB/TrEMBL;Acc:Q6NKY5]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.