Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- cytosol 1
- plastid 1
- extracellular 4
- endoplasmic reticulum 6
- vacuole 5
- plasma membrane 4
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY52906 | Canola | plastid | 88.36 | 86.11 |
| Bra038025.1-P | Field mustard | plastid | 88.12 | 85.88 |
| CDY53756 | Canola | endoplasmic reticulum | 89.07 | 85.62 |
| VIT_19s0015g00380.t01 | Wine grape | plastid | 76.48 | 76.48 |
| KRH14231 | Soybean | mitochondrion | 76.48 | 75.76 |
| PGSC0003DMT400057393 | Potato | plastid | 74.11 | 74.29 |
| Solyc07g065470.2.1 | Tomato | peroxisome, plasma membrane | 74.11 | 74.11 |
| GSMUA_Achr3P26040_001 | Banana | endoplasmic reticulum | 71.26 | 69.44 |
| TraesCS4D01G244300.1 | Wheat | plastid | 71.5 | 68.25 |
| TraesCS4B01G245100.1 | Wheat | plastid | 71.5 | 68.25 |
| TraesCS4A01G079100.1 | Wheat | plastid | 70.78 | 67.88 |
| Os03t0215800-01 | Rice | plastid | 71.97 | 67.33 |
| EER95270 | Sorghum | plastid | 72.21 | 66.96 |
| KRH73904 | Soybean | cytosol | 64.61 | 64.45 |
| HORVU4Hr1G067610.1 | Barley | plastid | 71.02 | 63.48 |
| Zm00001d028220_P001 | Maize | plastid | 71.73 | 61.63 |
| AT4G14880.5 | Thale cress | cytosol | 24.94 | 32.61 |
| AT3G04940.1 | Thale cress | cytosol | 24.94 | 32.41 |
| AT5G28020.1 | Thale cress | cytosol | 24.7 | 32.2 |
| AT5G28030.2 | Thale cress | cytosol | 24.47 | 31.89 |
| AT3G22460.1 | Thale cress | cytosol | 17.58 | 29.6 |
| AT3G03630.1 | Thale cress | plastid | 26.37 | 27.48 |
| AT3G61440.1 | Thale cress | mitochondrion | 23.99 | 27.45 |
| AT2G43750.1 | Thale cress | plastid | 24.94 | 26.79 |
| AT3G59760.1 | Thale cress | plastid | 25.18 | 24.48 |
Protein Annotations
| MapMan:35.1 | EntrezGene:842038 | ProteinID:AEE33313.1 | EMBL:AK226657 | ArrayExpress:AT1G55880 | EnsemblPlantsGene:AT1G55880 |
| RefSeq:AT1G55880 | TAIR:AT1G55880 | RefSeq:AT1G55880-TAIR-G | EnsemblPlants:AT1G55880.1 | TAIR:AT1G55880.1 | Unigene:At.42875 |
| EMBL:BT012558 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0006535 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0030170 | RefSeq:NP_175984.1 | InterPro:P-phosphate_BS | PFAM:PF00291 |
| InterPro:PLP-dep | PO:PO:0000037 | PO:PO:0000293 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009052 | PO:PO:0025022 |
| ScanProsite:PS00901 | PANTHER:PTHR10314 | PANTHER:PTHR10314:SF35 | UniProt:Q6NKY5 | SUPFAM:SSF53686 | TMHMM:TMhelix |
| InterPro:Trypto_synt_PLP_dependent | UniParc:UPI0000163169 | SEG:seg | : | : | : |
Description
At1g55880 [Source:UniProtKB/TrEMBL;Acc:Q6NKY5]
Coordinates
chr1:-:20898793..20901247
Molecular Weight (calculated)
45440.6 Da
IEP (calculated)
8.384
GRAVY (calculated)
-0.138
Length
421 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPVNMTGAV VAAAALLMLT SYSFFFRLSE KKKRKEKLTM RNGLVDAIGN TPLIRINSLS EATGCEILGK CEFLNPGGSV KDRVAVKIIQ EALESGKLFP
101: GGIVTEGSAG STAISLATVA PAYGCKCHVV IPDDAAIEKS QIIEALGASV ERVRPVSITH KDHYVNIARR RADEANELAS KRRLGSETNG IHQEKTNGCT
201: VEEVKEPSLF SDSVTGGFFA DQFENLANYR AHYEGTGPEI WHQTQGNIDA FVAAAGTGGT LAGVSRFLQD KNERVKCFLI DPPGSGLYNK VTRGVMYTRE
301: EAEGRRLKNP FDTITEGIGI NRLTKNFLMA KLDGGFRGTD KEAVEMSRFL LKNDGLFVGS SSAMNCVGAV RVAQTLGPGH TIVTILCDSG MRHLSKFHDP
401: KYLNLYGLSP TAIGLEFLGI K
101: GGIVTEGSAG STAISLATVA PAYGCKCHVV IPDDAAIEKS QIIEALGASV ERVRPVSITH KDHYVNIARR RADEANELAS KRRLGSETNG IHQEKTNGCT
201: VEEVKEPSLF SDSVTGGFFA DQFENLANYR AHYEGTGPEI WHQTQGNIDA FVAAAGTGGT LAGVSRFLQD KNERVKCFLI DPPGSGLYNK VTRGVMYTRE
301: EAEGRRLKNP FDTITEGIGI NRLTKNFLMA KLDGGFRGTD KEAVEMSRFL LKNDGLFVGS SSAMNCVGAV RVAQTLGPGH TIVTILCDSG MRHLSKFHDP
401: KYLNLYGLSP TAIGLEFLGI K
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.