Factsheet for TraesCS4D01G244300.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid, secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	plastid
Predotar:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G277500.1
TraesCS1B01G286500.1
TraesCS1D01G276700.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G55880.1	TraesCS1A01G277500.1	AT3G44590.1	21798944
AT1G55880.1	TraesCS1B01G286500.1	AT3G44590.1	21798944
AT1G55880.1	TraesCS1D01G276700.1	AT3G44590.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G245100.1	Wheat	plastid	99.09	99.09
TraesCS4A01G079100.1	Wheat	plastid	97.73	98.18
HORVU4Hr1G067610.1	Barley	plastid	97.28	91.08
Os03t0215800-01	Rice	plastid	84.81	83.11
EER95270	Sorghum	plastid	83.45	81.06
GSMUA_Achr3P26040_001	Banana	endoplasmic reticulum	73.92	75.46
Zm00001d028220_P001	Maize	plastid	82.54	74.29
PGSC0003DMT400057393	Potato	plastid	70.07	73.57
Solyc07g065470.2.1	Tomato	peroxisome, plasma membrane	70.07	73.4
VIT_19s0015g00380.t01	Wine grape	plastid	69.16	72.45
AT1G55880.1	Thale cress	endoplasmic reticulum	68.25	71.5
Bra038025.1-P	Field mustard	plastid	69.16	70.6
KRH14231	Soybean	mitochondrion	68.03	70.59
CDY52906	Canola	plastid	68.93	70.37
CDY53756	Canola	endoplasmic reticulum	68.93	69.41
KRH73904	Soybean	cytosol	56.92	59.48
TraesCS5D01G027600.1	Wheat	cytosol, golgi	24.49	33.23
TraesCS2D01G298600.2	Wheat	cytosol	26.53	32.68
TraesCS7D01G363000.1	Wheat	cytosol	23.13	30.09
TraesCS3D01G332100.1	Wheat	plastid	25.4	29.55
TraesCS7D01G096800.1	Wheat	cytoskeleton, cytosol, plastid	22.9	29.11
TraesCS3D01G087300.1	Wheat	plastid	23.81	26.79
TraesCS6D01G174200.1	Wheat	cytosol	17.46	26.74
TraesCS7D01G096700.1	Wheat	mitochondrion	23.36	26.01

Protein Annotations

EnsemblPlants:TraesCS4D01G244300.1	EnsemblPlantsGene:TraesCS4D01G244300	Gene3D:3.40.50.1100	GO:GO:0006535	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:P-phosphate_BS	InterPro:PLP-dep	InterPro:Trypto_synt_PLP_dependent	PANTHER:PTHR10314
PANTHER:PTHR10314:SF35	PFAM:PF00291	ScanProsite:PS00901	SEG:seg	SUPFAM:SSF53686	TIGR:cd01561
TMHMM:TMhelix	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr4D:+:409140886..409144463

Molecular Weight (calculated)

47263.0 Da

IEP (calculated)

8.384

GRAVY (calculated)

-0.204

Length

441 amino acids

Sequence
(BLAST)

001: MAAATATAAG AAAAAASISL FAYYFLFGRS GSKFPWARTT GADDRRTRRK GLVEAVGNTP LIRINSLSDA TGCEILGKAE FLNPGGSVKD RVAVKIIEEA
101: LKSGDLVCGG VVTEGSAGST AISLATVAPA YGCRCHVVIP DDAAVEKSQI IEALGATVER VRPVSITHRD HFVNIARRRA LEANIASAQR EPNHIQTNGS
201: AYVDTKTLNS KQTNGSAHAS SEVPDNGKCY PNSDSKGGFF ADQFENMANY RAHYEWTGPE IWKQTKGTVH AFVAAAGTGG TIAGVSRYLK EMNRNVRCFL
301: MDPPGSGLFN KVTRGVMYTK EEAEGKRLKN PFDTITEGIG INRVTANFMM AELDGAYRGT DREAVEMSRF LLRRDGLFVG SSSAMNCVGA VRVARDLGPG
401: HTIVTILCDS GMRHLSKFFN DEYLANHGLT PTATGLEFLD Q

Best Arabidopsis Sequence Match ( AT1G55880.1 )
(BLAST)

001: MAPVNMTGAV VAAAALLMLT SYSFFFRLSE KKKRKEKLTM RNGLVDAIGN TPLIRINSLS EATGCEILGK CEFLNPGGSV KDRVAVKIIQ EALESGKLFP
101: GGIVTEGSAG STAISLATVA PAYGCKCHVV IPDDAAIEKS QIIEALGASV ERVRPVSITH KDHYVNIARR RADEANELAS KRRLGSETNG IHQEKTNGCT
201: VEEVKEPSLF SDSVTGGFFA DQFENLANYR AHYEGTGPEI WHQTQGNIDA FVAAAGTGGT LAGVSRFLQD KNERVKCFLI DPPGSGLYNK VTRGVMYTRE
301: EAEGRRLKNP FDTITEGIGI NRLTKNFLMA KLDGGFRGTD KEAVEMSRFL LKNDGLFVGS SSAMNCVGAV RVAQTLGPGH TIVTILCDSG MRHLSKFHDP
401: KYLNLYGLSP TAIGLEFLGI K

Arabidopsis Description

At1g55880 [Source:UniProtKB/TrEMBL;Acc:Q6NKY5]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.