Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- extracellular 2
- endoplasmic reticulum 3
- vacuole 2
- plasma membrane 2
- golgi 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU1Hr1G073640.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G55880.1 | HORVU1Hr1G073640.1 | AT3G44590.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G079100.1 | Wheat | plastid | 91.08 | 97.72 |
| TraesCS4D01G244300.1 | Wheat | plastid | 91.08 | 97.28 |
| TraesCS4B01G245100.1 | Wheat | plastid | 90.66 | 96.83 |
| Os03t0215800-01 | Rice | plastid | 78.56 | 82.22 |
| EER95270 | Sorghum | plastid | 77.92 | 80.84 |
| GSMUA_Achr3P26040_001 | Banana | endoplasmic reticulum | 69.0 | 75.23 |
| Zm00001d028220_P001 | Maize | plastid | 76.86 | 73.88 |
| PGSC0003DMT400057393 | Potato | plastid | 65.39 | 73.33 |
| Solyc07g065470.2.1 | Tomato | peroxisome, plasma membrane | 65.39 | 73.16 |
| VIT_19s0015g00380.t01 | Wine grape | plastid | 65.18 | 72.92 |
| AT1G55880.1 | Thale cress | endoplasmic reticulum | 63.48 | 71.02 |
| KRH14231 | Soybean | mitochondrion | 63.48 | 70.35 |
| Bra038025.1-P | Field mustard | plastid | 64.33 | 70.14 |
| CDY52906 | Canola | plastid | 64.12 | 69.91 |
| CDY53756 | Canola | endoplasmic reticulum | 64.33 | 69.18 |
| KRH73904 | Soybean | cytosol | 53.93 | 60.19 |
| HORVU2Hr1G074630.2 | Barley | cytosol | 21.66 | 35.17 |
| HORVU7Hr1G021860.7 | Barley | cytosol | 22.08 | 29.89 |
| HORVU3Hr1G040910.1 | Barley | mitochondrion | 2.12 | 29.41 |
| HORVU7Hr1G087810.12 | Barley | cytosol, mitochondrion | 21.66 | 29.14 |
| HORVU3Hr1G079890.1 | Barley | plastid | 23.57 | 28.46 |
| HORVU7Hr1G023500.1 | Barley | cytosol | 6.16 | 27.36 |
| HORVU5Hr1G082120.2 | Barley | mitochondrion, plastid | 10.62 | 26.74 |
| HORVU6Hr1G063480.6 | Barley | endoplasmic reticulum | 22.29 | 26.52 |
| HORVU7Hr1G021840.21 | Barley | plastid | 21.02 | 26.33 |
| HORVU5Hr1G005980.2 | Barley | plastid | 22.72 | 24.49 |
| HORVU5Hr1G015070.1 | Barley | extracellular | 3.4 | 23.53 |
| HORVU2Hr1G000280.3 | Barley | golgi, peroxisome, plastid | 22.72 | 23.46 |
| HORVU2Hr1G072450.2 | Barley | cytosol | 4.03 | 20.65 |
| HORVU1Hr1G031220.3 | Barley | plastid | 15.71 | 18.18 |
Protein Annotations
| EnsemblPlants:HORVU4Hr1G067610.1 | EnsemblPlantsGene:HORVU4Hr1G067610 | Gene3D:3.40.50.1100 | GO:GO:0006535 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | InterPro:P-phosphate_BS | InterPro:PLP-dep | InterPro:Trypto_synt_PLP_dependent | PANTHER:PTHR10314 |
| PANTHER:PTHR10314:SF35 | PFAM:PF00291 | ScanProsite:PS00901 | SEG:seg | SUPFAM:SSF53686 | TMHMM:TMhelix |
| UniParc:UPI000B464572 | UniProt:A0A287PGG3 | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chrchr4H:-:560673690..560678138
Molecular Weight (calculated)
50728.4 Da
IEP (calculated)
8.411
GRAVY (calculated)
-0.135
Length
471 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAATAAGAA AAAASISLFA YYLLFGKSGS KFPWTRTTGA DDRRTRRKGL VEAVGNTPLI RINSLSDATG CEVFSWGIPF CAAPLCCLRF KVLRYWICYS
101: TGLQILGKAE FLNPGGSVKD RVAVKIIEEA LKSGNLVCGG VVTEGSAGST AISLATVAPA YGCRCHVVIP DDAAVEKSQI IEALGATVER VRPVSITHRD
201: HFVNIARRRA LEANIASAQT EPNDIQTNGS AYHDTKALNS RQTNGSAHAS SEVPDTGKCY PNSDSKGGFF ADQFENMANY RAHYEWTGPE IWKQTKGTVH
301: AFVAAAGTGG TIAGVSRYLK EMNRNVRCFL MDPPGSGLFN KVTRGVMYTK EEAEGKRLKN PFDTITEGIG INRVTANFMM AELDGAYRGT DREAVEMSRF
401: LLRRDGLFVG SSSAMNCVGA VRVARDLGPG HTIVTILCDS GMRHLSKFFN DEYLANHGLT PTATGLEFLD Q
101: TGLQILGKAE FLNPGGSVKD RVAVKIIEEA LKSGNLVCGG VVTEGSAGST AISLATVAPA YGCRCHVVIP DDAAVEKSQI IEALGATVER VRPVSITHRD
201: HFVNIARRRA LEANIASAQT EPNDIQTNGS AYHDTKALNS RQTNGSAHAS SEVPDTGKCY PNSDSKGGFF ADQFENMANY RAHYEWTGPE IWKQTKGTVH
301: AFVAAAGTGG TIAGVSRYLK EMNRNVRCFL MDPPGSGLFN KVTRGVMYTK EEAEGKRLKN PFDTITEGIG INRVTANFMM AELDGAYRGT DREAVEMSRF
401: LLRRDGLFVG SSSAMNCVGA VRVARDLGPG HTIVTILCDS GMRHLSKFFN DEYLANHGLT PTATGLEFLD Q
001: MAPVNMTGAV VAAAALLMLT SYSFFFRLSE KKKRKEKLTM RNGLVDAIGN TPLIRINSLS EATGCEILGK CEFLNPGGSV KDRVAVKIIQ EALESGKLFP
101: GGIVTEGSAG STAISLATVA PAYGCKCHVV IPDDAAIEKS QIIEALGASV ERVRPVSITH KDHYVNIARR RADEANELAS KRRLGSETNG IHQEKTNGCT
201: VEEVKEPSLF SDSVTGGFFA DQFENLANYR AHYEGTGPEI WHQTQGNIDA FVAAAGTGGT LAGVSRFLQD KNERVKCFLI DPPGSGLYNK VTRGVMYTRE
301: EAEGRRLKNP FDTITEGIGI NRLTKNFLMA KLDGGFRGTD KEAVEMSRFL LKNDGLFVGS SSAMNCVGAV RVAQTLGPGH TIVTILCDSG MRHLSKFHDP
401: KYLNLYGLSP TAIGLEFLGI K
101: GGIVTEGSAG STAISLATVA PAYGCKCHVV IPDDAAIEKS QIIEALGASV ERVRPVSITH KDHYVNIARR RADEANELAS KRRLGSETNG IHQEKTNGCT
201: VEEVKEPSLF SDSVTGGFFA DQFENLANYR AHYEGTGPEI WHQTQGNIDA FVAAAGTGGT LAGVSRFLQD KNERVKCFLI DPPGSGLYNK VTRGVMYTRE
301: EAEGRRLKNP FDTITEGIGI NRLTKNFLMA KLDGGFRGTD KEAVEMSRFL LKNDGLFVGS SSAMNCVGAV RVAQTLGPGH TIVTILCDSG MRHLSKFHDP
401: KYLNLYGLSP TAIGLEFLGI K
Arabidopsis Description
At1g55880 [Source:UniProtKB/TrEMBL;Acc:Q6NKY5]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.