Factsheet for Os03t0215800-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

endoplasmic reticulum 5
plasma membrane 4
vacuole 4
golgi 4
extracellular 4
cytosol 1
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	mitochondrion

plastid: 21433289

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os05t0445500-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G55880.1	Os05t0445500-01	AT3G44590.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER95270	Sorghum	plastid	87.11	86.34
TraesCS4D01G244300.1	Wheat	plastid	83.11	84.81
TraesCS4A01G079100.1	Wheat	plastid	82.67	84.74
TraesCS4B01G245100.1	Wheat	plastid	82.67	84.35
HORVU4Hr1G067610.1	Barley	plastid	82.22	78.56
Zm00001d028220_P001	Maize	plastid	84.22	77.35
GSMUA_Achr3P26040_001	Banana	endoplasmic reticulum	74.0	77.08
VIT_19s0015g00380.t01	Wine grape	plastid	68.89	73.63
Solyc07g065470.2.1	Tomato	peroxisome, plasma membrane	68.44	73.16
PGSC0003DMT400057393	Potato	plastid	68.0	72.86
AT1G55880.1	Thale cress	endoplasmic reticulum	67.33	71.97
KRH14231	Soybean	mitochondrion	67.56	71.53
Bra038025.1-P	Field mustard	plastid	67.33	70.14
CDY52906	Canola	plastid	67.33	70.14
CDY53756	Canola	endoplasmic reticulum	67.33	69.18
KRH73904	Soybean	cytosol	57.11	60.9
Os12t0625000-01	Rice	plasma membrane	24.67	31.99
Os06t0149700-00	Rice	cytosol	23.78	31.56
Os06t0564700-01	Rice	cytosol	23.56	30.99
Os06t0564400-00	Rice	cytosol	17.33	30.35
Os04t0165700-01	Rice	mitochondrion	24.44	29.18
Os02t0222100-01	Rice	cytosol	7.11	28.57
Os01t0978100-01	Rice	plastid	24.67	28.17
Os06t0564500-01	Rice	cytosol	22.22	28.01
Os06t0149900-01	Rice	cytosol	21.33	27.67
Os01t0814800-01	Rice	plastid	23.78	27.3

Protein Annotations

Gene3D:3.40.50.1100	MapMan:35.1	EntrezGene:4332062	ProteinID:ABF94641.1	EMBL:AK071308	ProteinID:BAF11293.1
ProteinID:BAS82966.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006535	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0030170	EnsemblPlantsGene:Os03g0215800	EnsemblPlants:Os03t0215800-01	InterPro:P-phosphate_BS	PFAM:PF00291	InterPro:PLP-dep
ScanProsite:PS00901	PANTHER:PTHR10314	PANTHER:PTHR10314:SF35	UniProt:Q10PZ5	SUPFAM:SSF53686	SignalP:SignalP-noTM
TMHMM:TMhelix	InterPro:Trypto_synt_PLP_dependent	UniParc:UPI0000DB414F	RefSeq:XP_015631293.1	SEG:seg	:

Description

Pyridoxal phosphate-dependent enzyme, beta subunit domain containing protein. (Os03t0215800-01)

Coordinates

chr3:+:6085640..6089018

Molecular Weight (calculated)

48224.4 Da

IEP (calculated)

8.541

GRAVY (calculated)

-0.233

Length

450 amino acids

Sequence
(BLAST)

001: MAAATAAAGA AAAVSLLACY LLLHRDGAKL PWVGPTTRSS RSSGRRTRRK GLVEAIGNTP LIRINSLSDA TGCEILGKAE FLNPGGSVKD RVAVKIIEEA
101: LESGDLLCGG TVTEGSAGST AISLAIVAPA YGCKCHVVIP DDAAIEKSQI IEALGATVER VRPVSITHRD HFVNIARRRA LEANKSAAAQ RESRYKETNG
201: SAHVNTRIMH SKITASKGES NKALTNCSAN SEIQYNGKCD HDSDSKGGFF ADQFENMANY RAHYEWTGPE IWQQSKGTLH AFVAAAGTGG TIAGVSRYLK
301: EKNTNIKCFL MDPPGSGLFN KVTRGVMYTK EEAEGKRLKN PFDTITEGIG INRVTKNFMM AELDGAYRGT DREAVEMSRF LLKNDGLFVG SSSAMNCVGA
401: VRVAQDLGPG HTIVTILCDS GMRHLSKFFN DQYLANHGLT PTATGLEFLD

Best Arabidopsis Sequence Match ( AT1G55880.1 )
(BLAST)

001: MAPVNMTGAV VAAAALLMLT SYSFFFRLSE KKKRKEKLTM RNGLVDAIGN TPLIRINSLS EATGCEILGK CEFLNPGGSV KDRVAVKIIQ EALESGKLFP
101: GGIVTEGSAG STAISLATVA PAYGCKCHVV IPDDAAIEKS QIIEALGASV ERVRPVSITH KDHYVNIARR RADEANELAS KRRLGSETNG IHQEKTNGCT
201: VEEVKEPSLF SDSVTGGFFA DQFENLANYR AHYEGTGPEI WHQTQGNIDA FVAAAGTGGT LAGVSRFLQD KNERVKCFLI DPPGSGLYNK VTRGVMYTRE
301: EAEGRRLKNP FDTITEGIGI NRLTKNFLMA KLDGGFRGTD KEAVEMSRFL LKNDGLFVGS SSAMNCVGAV RVAQTLGPGH TIVTILCDSG MRHLSKFHDP
401: KYLNLYGLSP TAIGLEFLGI K

Arabidopsis Description

At1g55880 [Source:UniProtKB/TrEMBL;Acc:Q6NKY5]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.