CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH26049
KRH55364

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G28020.1	KRH26049	AT5G54390.1	21798944
AT5G28020.1	KRH55364	AT5G54390.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH34052	Soybean	cytosol	97.21	96.91
KRH34037	Soybean	cytosol	80.5	80.5
KRH13764	Soybean	cytosol	78.95	79.44
VIT_14s0030g01520.t01	Wine grape	cytosol	76.47	76.47
KRH27640	Soybean	cytosol	73.99	73.54
KRH68699	Soybean	cytosol	73.68	73.23
KRG96937	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	73.68	73.23
CDY50768	Canola	cytosol	72.76	73.21
CDY41911	Canola	cytosol	72.76	73.21
AT3G04940.1	Thale cress	cytosol	73.37	73.15
KRH43690	Soybean	cytosol	52.63	72.96
GSMUA_Achr11P...	Banana	cytosol	72.76	72.53
GSMUA_Achr9P25760_001	Banana	cytosol	72.76	72.53
VIT_14s0030g01550.t01	Wine grape	cytosol	76.78	72.51
KRG91325	Soybean	cytosol, mitochondrion, nucleus	72.76	72.31
GSMUA_Achr3P30900_001	Banana	cytosol, unclear	72.14	71.69
KXG24064	Sorghum	cytosol	71.83	71.38
Zm00001d031136_P003	Maize	plasma membrane	71.83	71.38
CDY69239	Canola	cytosol	70.9	71.34
CDX74160	Canola	cytosol	70.59	71.03
TraesCS5D01G027600.1	Wheat	cytosol, golgi	71.21	70.77
GSMUA_Achr4P21350_001	Banana	cytosol	71.21	70.77
CDY00007	Canola	cytosol	69.66	69.66
Solyc01g097950.2.1	Tomato	cytosol	69.35	69.35
AT5G28020.1	Thale cress	cytosol	69.35	69.35
CDY52498	Canola	cytosol	69.35	69.35
Bra036115.1-P	Field mustard	cytosol	69.35	69.35
CDY05586	Canola	cytosol	69.35	69.35
CDY19703	Canola	cytosol	69.35	69.35
CDX86187	Canola	cytosol	65.02	69.08
KRH35519	Soybean	cytosol	65.02	68.85
CDY41913	Canola	cytosol	64.71	68.75
CDX80680	Canola	cytosol	64.71	68.75
Bra009985.1-P	Field mustard	cytosol	58.82	68.59
AT5G28030.2	Thale cress	cytosol	68.42	68.42
KRH77854	Soybean	cytosol	15.48	67.57
Solyc01g097940.1.1	Tomato	plasma membrane	40.87	67.35
Os12t0625000-01	Rice	plasma membrane	70.9	65.99
Solyc01g097920.2.1	Tomato	cytosol, plastid	71.21	64.61
TraesCS2B01G316800.1	Wheat	cytosol	65.02	64.22
Solyc01g097930.2.1	Tomato	cytosol	64.09	64.09
TraesCS2A01G300600.1	Wheat	cytosol	64.71	63.91
CDY19702	Canola	mitochondrion	69.35	63.82
CDY00008	Canola	mitochondrion	69.04	63.53
Bra036114.1-P	Field mustard	cytosol	67.18	63.45
KRG92761	Soybean	cytosol	63.78	62.24
HORVU2Hr1G074630.2	Barley	cytosol	55.11	61.38
KXG26295	Sorghum	cytosol	65.02	60.0
Zm00001d003717_P001	Maize	cytosol	65.02	59.66
HORVU3Hr1G040910.1	Barley	mitochondrion	6.19	58.82
TraesCS2D01G298600.2	Wheat	cytosol	65.02	58.66
Bra001131.1-P	Field mustard	mitochondrion	70.28	56.75
KRH50190	Soybean	nucleus, plastid	68.11	56.56
CDY41915	Canola	cytosol	10.84	56.45
KRH71273	Soybean	nucleus, plastid	68.11	55.84
VIT_14s0030g01490.t01	Wine grape	cytosol	75.54	55.58
TraesCS5A01G022200.1	Wheat	plastid	70.9	53.5
KRH74905	Soybean	cytosol	13.0	52.5
TraesCS5B01G018700.3	Wheat	plastid	71.21	52.39
HORVU5Hr1G005980.2	Barley	plastid	70.59	52.17
HORVU5Hr1G015070.1	Barley	extracellular	10.84	51.47
KRG94935	Soybean	nucleus	58.2	50.67
KRH64961	Soybean	nucleus, plastid	58.51	50.53
Bra020605.1-P	Field mustard	mitochondrion	67.49	50.23
KRH40428	Soybean	mitochondrion	57.28	49.6
KRH00797	Soybean	mitochondrion	56.97	49.46
Bra040417.1-P	Field mustard	cytosol	47.06	48.72
HORVU5Hr1G082120.2	Barley	mitochondrion, plastid	27.86	48.13
HORVU1Hr1G031220.3	Barley	plastid	38.08	30.22
KRH14231	Soybean	mitochondrion	33.44	25.41
KRH73904	Soybean	cytosol	29.1	22.27

Protein Annotations

KEGG:00270+2.5.1.47	KEGG:00920+2.5.1.47	EntrezGene:100101909	Gene3D:3.40.50.1100	MapMan:50.2.5	EMBL:ACUP02012766
InterPro:CysK	InterPro:Cys_synth	EnsemblPlantsGene:GLYMA_20G228900	GO:GO:0003674	GO:GO:0003824	GO:GO:0004124
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006535
GO:GO:0008150	GO:GO:0008152	GO:GO:0008652	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740
GO:GO:0019344	GO:GO:0030170	UniProt:I1NIU6	EnsemblPlants:KRG92757	ProteinID:KRG92757	ProteinID:KRG92757.1
ProteinID:KRG92758.1	ProteinID:KRG92759.1	InterPro:P-phosphate_BS	PFAM:PF00291	InterPro:PLP-dep	ScanProsite:PS00901
PANTHER:PTHR10314	PANTHER:PTHR10314:SF97	MetaCyc:PWY-6936	SUPFAM:SSF53686	TIGRFAMs:TIGR01136	TIGRFAMs:TIGR01139
InterPro:Trypto_synt_PLP_dependent	UniParc:UPI00023DC016	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr20:+:46298670..46304749

Molecular Weight (calculated)

34682.2 Da

IEP (calculated)

5.126

GRAVY (calculated)

0.016

Length

323 amino acids

Sequence
(BLAST)

001: MEPQCRIKKD ATELIGNTPM VYLNNIVDGC VARIAAKLEY MQACCSVKDR IALSMIEDAE KKGLITPGKT VLVEYTSGNT GIGLAFIAAL RGYKLQVTMP
101: SYVSLERKII LRAFGAEVYL TDPAKGIDGV IQKAEELIAK TPDSFMLNQF ENPANPNIHY ETTGPEIWRD SGEKIDALVS GIGTGGSIAG AGRFLREKNP
201: DIKLYGVEPA ESPVLNGGQP GKHLIQGIGA GIIPKVLDVN LLDEVIQVSS EEAIETAKLL ALKEGLLMGI SSGAAAAAAI KVGKRPENAG KLIVVIFPSF
301: GERYLSSPLF ESIRKEAEQM TFD

Best Arabidopsis Sequence Match ( AT3G04940.1 )
(BLAST)

001: MEEDRCSIKD DATQLIGNTP MVYLNNIVDG CVARIAAKLE MMEPCSSVKE RIAYGMIKDA EDKGLITPGK STLIEATSGN TGIGLAFIGA AKGYKVVLTM
101: PSSMSLERKI ILLALGAEVH LTDPSKGVQG IIDKAEEICS KNPDSIMLEQ FKNPSNPQTH YRTTGPEIWR DSAGEVDILV AGVGTGGTLS GSGRFLKEKN
201: KDFKVYGVEP TESAVISGGK PGTHLIQGIG AGLIPDNLDF NVLDEVIQVT SVEAIETAKL LALKEGLLVG ISSGAAAAAA IKVAKRPENA GKLIVVIFPS
301: GGERYLSTSL FESVRHEAEN LPIQ

Arabidopsis Description

CYSD1Bifunctional L-3-cyanoalanine synthase/cysteine synthase D1 [Source:UniProtKB/Swiss-Prot;Acc:Q9S6Z7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.