Factsheet for Solyc10g006040.1.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 5
cytosol 3
mitochondrion 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	cytosol, mitochondrion, plastid
PProwler:	plastid
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	mitochondrion

extracellular: 29876421

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc07g065340.1.1
Solyc08g014340.2.1
Solyc10g006040.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G55920.1	Solyc07g065340.1.1	AT1G55920.1	9076992
AT1G55920.1	Solyc10g006040.1.1	AT1G55920.1	9076992
AT3G13110.1	Solyc07g065340.1.1	AT3G13110.1	11168407
AT3G13110.1	Solyc10g006040.1.1	AT3G13110.1	11168407
AT3G13110.1	Solyc08g014340.2.1	AT3G59760.1	11168407
AT3G13110.1	Solyc08g014340.2.1	AT3G59760.1	12063244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400037270	Potato	plastid	97.81	97.81
Solyc07g065340.1.1	Tomato	cytosol	67.95	74.92
CDY52913	Canola	cytosol	50.68	69.81
AT1G55920.1	Thale cress	cytosol	56.44	65.61
Bra038031.1-P	Field mustard	cytosol	52.33	64.53
CDY53752	Canola	cytosol	53.7	63.64
CDY08269	Canola	cytosol	54.79	63.49
CDY42400	Canola	cytosol	55.62	63.04
Bra030821.1-P	Field mustard	cytosol	55.62	63.04
Bra037094.1-P	Field mustard	cytosol	54.25	62.86
CDY10517	Canola	cytosol	55.62	62.85
CDY26079	Canola	cytosol	54.79	62.5
VIT_19s0015g00130.t01	Wine grape	mitochondrion	64.11	62.07
KRH00049	Soybean	mitochondrion	29.04	61.99
CDX84336	Canola	cytosol	52.88	61.27
GSMUA_Achr6P24840_001	Banana	cytosol	26.58	59.15
KRH05125	Soybean	mitochondrion	24.66	57.32
KRH46343	Soybean	mitochondrion	60.27	56.85
GSMUA_AchrUn_...	Banana	cytosol	38.08	56.73
Solyc12g008780.1.1	Tomato	cytosol	44.93	55.97
KRG98542	Soybean	mitochondrion	59.73	55.75
KRH73892	Soybean	mitochondrion	54.25	55.62
KRH14245	Soybean	mitochondrion	52.05	54.13
AT3G13110.1	Thale cress	mitochondrion, plastid	56.71	52.94
TraesCS4B01G263300.1	Wheat	mitochondrion	44.66	52.75
Bra034705.1-P	Field mustard	plastid	56.71	52.67
HORVU4Hr1G071040.1	Barley	cytosol, mitochondrion	44.66	51.91
TraesCS4A01G042700.1	Wheat	cytosol, mitochondrion	44.38	51.59
TraesCS4D01G263500.1	Wheat	cytosol, mitochondrion	44.11	51.27
EER92698	Sorghum	cytosol	42.74	50.16
Zm00001d028154_P001	Maize	cytosol	42.47	49.36
Os03t0196600-01	Rice	cytosol, plasma membrane	41.64	48.25
Os03t0185000-00	Rice	cytosol, plasma membrane	39.45	47.84
Solyc02g082850.2.1	Tomato	cytosol	36.44	37.36

Protein Annotations

KEGG:00270+2.3.1.30	KEGG:00920+2.3.1.30	Gene3D:1.10.3130.10	Gene3D:2.160.10.10	MapMan:4.1.4.2.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0006535	GO:GO:0008150	GO:GO:0008152	GO:GO:0009001	GO:GO:0009058	GO:GO:0009987
GO:GO:0016740	GO:GO:0019344	InterPro:Hexapep	InterPro:Hexapep_transf_CS	UniProt:K4CXD6	PFAM:PF00132
PFAM:PF06426	ScanProsite:PS00101	PANTHER:PTHR42811	PANTHER:PTHR42811:SF2	SMART:SM00971	SUPFAM:SSF51161
InterPro:Ser_AcTrfase_N	InterPro:Ser_O-AcTrfase	EnsemblPlantsGene:Solyc10g006040.1	EnsemblPlants:Solyc10g006040.1.1	TIGRFAMs:TIGR01172	InterPro:Trimer_LpxA-like_sf
UniParc:UPI000276CB83	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr10:+:784572..785669

Molecular Weight (calculated)

40129.4 Da

IEP (calculated)

6.829

GRAVY (calculated)

-0.083

Length

365 amino acids

Sequence
(BLAST)

001: MSTNLLGSPF LLKNVLTISP YNNNKLSIFT IKACLHSSRT KTPNPNKSQI DDHVYNYTKY CTPNFPDHVS QTPISEKELK NTRNGGILDD FEKKGVLDLW
101: LKMQDEARFD VEQEPILENY YKNSILVQDC MESALAYHLS LKLSNSSLPS DALFELFMGV LIEDQELIFD VTDDLRAVKE RDPACVSYVH CFLNFKGFLA
201: CQAHRISHRL WSKGRKIVAL VIQNRVCEVF AVDIHPGAKI GSGILLDHAT GVVIGETAVI GNNVSILHNV TLGGTGKVCG DRHPKIGDGV LIGAGTCVLG
301: NVRIEDGAKI GAGSVVLMEV PARTTAVGNP ARLIGGKENP IKLDKIPSLT MDHTSHMSDW SDYVI

Best Arabidopsis Sequence Match ( AT3G13110.1 )
(BLAST)

001: MLPVTSRRHF TMSLYMLRSS SPHINHHSFL LPSFVSSKFK HHTLSPPPSP PPPPPMAACI DTCRTGKPQI SPRDSSKHHD DESGFRYMNY FRYPDRSSFN
101: GTQTKTLHTR PLLEDLDRDA EVDDVWAKIR EEAKSDIAKE PIVSAYYHAS IVSQRSLEAA LANTLSVKLS NLNLPSNTLF DLFSGVLQGN PDIVESVKLD
201: LLAVKERDPA CISYVHCFLH FKGFLACQAH RIAHELWTQD RKILALLIQN RVSEAFAVDF HPGAKIGTGI LLDHATAIVI GETAVVGNNV SILHNVTLGG
301: TGKQCGDRHP KIGDGVLIGA GTCILGNITI GEGAKIGAGS VVLKDVPPRT TAVGNPARLL GGKDNPKTHD KIPGLTMDQT SHISEWSDYV I

Arabidopsis Description

SAT3Serine acetyltransferase 3, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q39218]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.