CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 5
cytosol 4
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	cytosol, mitochondrion, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	extracellular

mitochondrion: 21766870

msms PMID: 21766870 doi

S Komatsu, A Yamamoto, T Nakamura, MZ Nouri, Y Nanjo, K Nishizawa, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG98542
KRH00049
KRH05125
KRH14245
KRH46343
KRH50190
KRH71273
KRH73892

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G55920.1	KRG98542	AT1G55920.1	9076992
AT1G55920.1	KRH00049	AT1G55920.1	9076992
AT1G55920.1	KRH05125	AT1G55920.1	9076992
AT1G55920.1	KRH14245	AT1G55920.1	9076992
AT1G55920.1	KRH46343	AT1G55920.1	9076992
AT1G55920.1	KRH73892	AT1G55920.1	9076992
AT3G13110.1	KRG98542	AT3G13110.1	11168407
AT3G13110.1	KRH00049	AT3G13110.1	11168407
AT3G13110.1	KRH05125	AT3G13110.1	11168407
AT3G13110.1	KRH14245	AT3G13110.1	11168407
AT3G13110.1	KRH46343	AT3G13110.1	11168407
AT3G13110.1	KRH73892	AT3G13110.1	11168407
AT3G13110.1	KRH50190	AT3G59760.1	11168407
AT3G13110.1	KRH71273	AT3G59760.1	11168407
AT3G13110.1	KRH50190	AT3G59760.1	12063244
AT3G13110.1	KRH71273	AT3G59760.1	12063244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH05125	Soybean	mitochondrion	57.31	62.42
GSMUA_Achr6P24840_001	Banana	cytosol	38.01	39.63
CDY52913	Canola	cytosol	58.48	37.74
GSMUA_AchrUn_...	Banana	cytosol	48.54	33.88
Bra038031.1-P	Field mustard	cytosol	58.48	33.78
PGSC0003DMT400057095	Potato	cytosol	64.33	33.23
Solyc07g065340.1.1	Tomato	cytosol	64.33	33.23
KRH06519	Soybean	cytosol, mitochondrion, nucleus	55.56	33.22
KRH47957	Soybean	cytosol, mitochondrion, nucleus	54.97	32.87
CDY53752	Canola	cytosol	58.48	32.47
KRH76556	Soybean	cytosol	38.6	32.35
AT1G55920.1	Thale cress	cytosol	58.48	31.85
CDX84336	Canola	cytosol	58.48	31.75
CDY08269	Canola	cytosol	57.89	31.43
Bra037094.1-P	Field mustard	cytosol	57.89	31.43
KRH46343	Soybean	mitochondrion	70.18	31.01
KRG98542	Soybean	mitochondrion	70.76	30.95
CDY26079	Canola	cytosol	57.89	30.94
Bra030821.1-P	Field mustard	cytosol	57.89	30.75
CDY10517	Canola	cytosol	57.89	30.65
CDY42400	Canola	cytosol	57.31	30.43
KRH73892	Soybean	mitochondrion	61.99	29.78
KRH14245	Soybean	mitochondrion	59.65	29.06
Solyc10g006040.1.1	Tomato	extracellular	61.99	29.04
PGSC0003DMT400037270	Potato	plastid	61.4	28.77
AT3G13110.1	Thale cress	mitochondrion, plastid	61.4	26.85
Bra034705.1-P	Field mustard	plastid	61.4	26.72
TraesCS4B01G263300.1	Wheat	mitochondrion	46.78	25.89
TraesCS4A01G042700.1	Wheat	cytosol, mitochondrion	46.2	25.16
EER92698	Sorghum	cytosol	45.61	25.08
HORVU4Hr1G071040.1	Barley	cytosol, mitochondrion	45.61	24.84
TraesCS4D01G263500.1	Wheat	cytosol, mitochondrion	45.61	24.84
Zm00001d028154_P001	Maize	cytosol	45.03	24.52
Os03t0196600-01	Rice	cytosol, plasma membrane	44.44	24.13
Os03t0185000-00	Rice	cytosol, plasma membrane	39.18	22.26
KRH28896	Soybean	mitochondrion	41.52	19.67
KRH07931	Soybean	cytosol, mitochondrion	38.6	19.24
KRH69684	Soybean	mitochondrion	37.43	15.84
KRH76559	Soybean	cytosol	2.34	2.82

Protein Annotations

Gene3D:2.160.10.10	MapMan:4.1.4.2.1	EMBL:ACUP02011366	EnsemblPlantsGene:GLYMA_18G188200	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0008150
GO:GO:0008152	GO:GO:0009001	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0019344
InterPro:Hexapep	UniProt:K7MTA2	EnsemblPlants:KRH00049	ProteinID:KRH00049	ProteinID:KRH00049.1	PFAM:PF00132
PANTHER:PTHR42811	PANTHER:PTHR42811:SF2	SUPFAM:SSF51161	InterPro:Trimer_LpxA-like_sf	UniParc:UPI000295E83A	SEG:seg

Description

hypothetical protein

Coordinates

chr18:+:45256374..45263103

Molecular Weight (calculated)

18446.7 Da

IEP (calculated)

8.808

GRAVY (calculated)

0.158

Length

171 amino acids

Sequence
(BLAST)

001: MVQVLNFFSI KLEYVMIPMS VLPCCSSYVV CTSYCKHERK EIKPVVDKKG PVIAYHATGL VVEETAFIGN NVSILHNVTL GGTGKARGDR HLKIGDGVLI
101: GPGTWTCILG NIKIGDGAKI GACSVVLKEV PPRTTAVGNP ARVVGGKDNP IKLDKMPSFT MDHTSWFDYA I

Best Arabidopsis Sequence Match ( AT1G55920.1 )
(BLAST)

001: MATCIDTCRT GNTQDDDSRF CCIKNFFRPG FSVNRKIHHT QIEDDDDVWI KMLEEAKSDV KQEPILSNYY YASITSHRSL ESALAHILSV KLSNLNLPSN
101: TLFELFISVL EESPEIIEST KQDLIAVKER DPACISYVHC FLGFKGFLAC QAHRIAHTLW KQNRKIVALL IQNRVSESFA VDIHPGAKIG KGILLDHATG
201: VVIGETAVVG DNVSILHGVT LGGTGKQSGD RHPKIGDGVL IGAGSCILGN ITIGEGAKIG SGSVVVKDVP ARTTAVGNPA RLIGGKENPR KHDKIPCLTM
301: DQTSYLTEWS DYVI

Arabidopsis Description

SAT1Serine acetyltransferase 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q42588]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.