CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, mitochondrion

Predictor Summary:

nucleus 1
cytosol 5
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
mitochondrion: 21766870

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 21766870 doi

S Komatsu, A Yamamoto, T Nakamura, MZ Nouri, Y Nanjo, K Nishizawa, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH47957	Soybean	cytosol, mitochondrion, nucleus	95.8	95.8
VIT_11s0016g02450.t01	Wine grape	cytosol	86.71	85.52
PGSC0003DMT400000764	Potato	cytosol	86.71	84.64
Solyc12g008780.1.1	Tomato	cytosol	86.71	84.64
Bra002793.1-P	Field mustard	cytosol	81.47	75.65
AT5G56760.1	Thale cress	cytosol	82.52	75.64
GSMUA_Achr2P09310_001	Banana	cytosol, peroxisome, plastid	80.42	75.41
Bra006857.1-P	Field mustard	cytosol	81.12	75.08
CDY11904	Canola	cytosol	81.12	75.08
CDY32760	Canola	cytosol	80.77	75.0
CDX88588	Canola	cytosol	81.12	74.84
GSMUA_Achr8P27570_001	Banana	plastid	68.53	74.81
CDY32882	Canola	cytoskeleton, cytosol, nucleus	80.42	74.68
HORVU0Hr1G022440.1	Barley	mitochondrion	74.48	70.3
TraesCS3B01G321600.1	Wheat	cytosol	74.48	70.3
TraesCS3D01G286900.1	Wheat	mitochondrion	74.13	69.97
TraesCS3A01G287400.1	Wheat	mitochondrion	74.13	69.97
Os05t0533500-01	Rice	cytosol	75.87	69.11
TraesCS1A01G353800.1	Wheat	cytosol	75.52	69.01
TraesCS1D01G356800.1	Wheat	cytosol	75.87	68.89
Zm00001d011735_P001	Maize	cytosol, mitochondrion	73.43	67.74
EES19864	Sorghum	cytosol	75.87	67.6
OQU87436	Sorghum	cytosol, mitochondrion, peroxisome, plastid	73.78	66.98
GSMUA_Achr4P01080_001	Banana	cytosol	45.45	63.41
Zm00001d038737_P001	Maize	extracellular	75.52	61.54
KRH00049	Soybean	mitochondrion	33.22	55.56
KRH05125	Soybean	mitochondrion	30.07	54.78
HORVU0Hr1G035820.1	Barley	plastid	74.48	53.65
KRH76556	Soybean	cytosol	36.71	51.47
KRH14245	Soybean	mitochondrion	58.74	47.86
KRH73892	Soybean	mitochondrion	58.74	47.19
KRH46343	Soybean	mitochondrion	61.19	45.22
KRG98542	Soybean	mitochondrion	60.49	44.25
KRH07931	Soybean	cytosol, mitochondrion	46.15	38.48
KRH28896	Soybean	mitochondrion	48.25	38.23
KRH69684	Soybean	mitochondrion	44.76	31.68
KRH76559	Soybean	cytosol	10.14	20.42

Protein Annotations

KEGG:00270+2.3.1.30	KEGG:00920+2.3.1.30	Gene3D:1.10.3130.10	Gene3D:2.160.10.10	MapMan:4.1.4.2.1	UniProt:A0A0R4J5I5
EMBL:ACUP02009849	EnsemblPlantsGene:GLYMA_16G027700	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006535	GO:GO:0008150	GO:GO:0008152	GO:GO:0009001
GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	InterPro:Hexapep	InterPro:Hexapep_transf_CS	EnsemblPlants:KRH06519
ProteinID:KRH06519	ProteinID:KRH06519.1	PFAM:PF00132	PFAM:PF06426	PIRSF:PIRSF000441	ScanProsite:PS00101
PANTHER:PTHR42811	PANTHER:PTHR42811:SF9	MetaCyc:PWY-6936	MetaCyc:PWY-7274	SMART:SM00971	SUPFAM:SSF51161
InterPro:Ser_AcTrfase_N	InterPro:Ser_O-AcTrfase	TIGRFAMs:TIGR01172	InterPro:Trimer_LpxA-like_sf	UniParc:UPI00019D3461	SEG:seg

Description

hypothetical protein

Coordinates

chr16:+:2709421..2711204

Molecular Weight (calculated)

30364.3 Da

IEP (calculated)

7.425

GRAVY (calculated)

0.047

Length

286 amino acids

Sequence
(BLAST)

001: MPTGLPAANS LVAPDEEGWV WGQIKAEARR DAESEPALAS YLYSTILSHS SLERSLSFHL GNKLCSSTLL STLLYDLFLN AFSSDPSLRS AAVADLRAAR
101: ERDPACVSYS HCLLNYKGFL ACQAHRVAHL LWRQSRRPLA LALHSRIADV FAVDIHPAAR IGKGILFDHA TGVVVGETAV IGNNVSILHH VTLGGTGKVG
201: GDRHPKIGDG VLIGAGATIL GNIKIGEGAK VGAGSVVLID VPPRTTAVGN PARLVGGKEK PSKHEDVPGE SMDHTSFISE WSDYII

Best Arabidopsis Sequence Match ( AT5G56760.1 )
(BLAST)

001: MPPAGELRHQ SPSKEKLSSV TQSDEAEAAS AAISAAAADA EAAGLWTQIK AEARRDAEAE PALASYLYST ILSHSSLERS ISFHLGNKLC SSTLLSTLLY
101: DLFLNTFSSD PSLRNATVAD LRAARVRDPA CISFSHCLLN YKGFLAIQAH RVSHKLWTQS RKPLALALHS RISDVFAVDI HPAAKIGKGI LLDHATGVVV
201: GETAVIGNNV SILHHVTLGG TGKACGDRHP KIGDGCLIGA GATILGNVKI GAGAKVGAGS VVLIDVPCRG TAVGNPARLV GGKEKPTIHD EECPGESMDH
301: TSFISEWSDY II

Arabidopsis Description

SAT5Serine acetyltransferase 5 [Source:UniProtKB/Swiss-Prot;Acc:Q42538]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.