CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
endoplasmic reticulum 1
mitochondrion 3
cytosol 2
golgi 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 21766870

msms PMID: 21766870 doi

S Komatsu, A Yamamoto, T Nakamura, MZ Nouri, Y Nanjo, K Nishizawa, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH07931	Soybean	cytosol, mitochondrion	61.14	72.01
KRH76556	Soybean	cytosol	33.17	65.69
Bra024500.1-P	Field mustard	cytosol, peroxisome, plastid	46.04	58.49
KRH28896	Soybean	mitochondrion	51.98	58.17
VIT_04s0210g00190.t01	Wine grape	cytosol	47.52	58.01
CDY29188	Canola	cytosol, peroxisome, plastid	46.04	57.76
AT2G17640.1	Thale cress	cytosol	45.79	57.28
CDY07835	Canola	cytosol, peroxisome, plastid	45.3	56.83
HORVU4Hr1G081310.6	Barley	mitochondrion	44.8	56.04
Solyc02g082850.2.1	Tomato	cytosol	49.01	55.62
PGSC0003DMT400003992	Potato	cytosol	49.26	55.59
Zm00001d027536_P003	Maize	cytoskeleton, cytosol, peroxisome	45.54	54.12
TraesCS4B01G330300.1	Wheat	cytosol	45.05	53.85
AT4G35640.1	Thale cress	cytosol	47.28	53.8
TraesCS4D01G327200.1	Wheat	cytosol	44.8	53.71
TraesCS5A01G501800.1	Wheat	cytosol	44.55	53.41
EER92913	Sorghum	cytosol	44.55	52.94
GSMUA_Achr5P19080_001	Banana	cytosol	44.31	52.8
Os03t0133900-01	Rice	cytosol	45.3	51.69
KRH76559	Soybean	cytosol	16.09	45.77
KRH06519	Soybean	cytosol, mitochondrion, nucleus	31.68	44.76
KRH47957	Soybean	cytosol, mitochondrion, nucleus	31.44	44.41
CDY26432	Canola	cytosol	15.35	39.74
KRH00049	Soybean	mitochondrion	15.84	37.43
KRH05125	Soybean	mitochondrion	14.11	36.31
KRH73892	Soybean	mitochondrion	31.68	35.96
KRG98542	Soybean	mitochondrion	33.66	34.78
KRH14245	Soybean	mitochondrion	30.2	34.76
KRH46343	Soybean	mitochondrion	33.17	34.63

Protein Annotations

KEGG:00270+2.3.1.30	KEGG:00920+2.3.1.30	Gene3D:1.10.3130.10	EntrezGene:100812677	Gene3D:2.160.10.10	MapMan:4.1.4.2.1
EMBL:ACUP02000728	EnsemblPlantsGene:GLYMA_02G042000	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006535	GO:GO:0008150	GO:GO:0008152
GO:GO:0009001	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0019344	InterPro:Hexapep
InterPro:Hexapep_transf_CS	UniProt:K7K6E3	EnsemblPlants:KRH69684	ProteinID:KRH69684	ProteinID:KRH69684.1	PFAM:PF00132
PFAM:PF06426	ScanProsite:PS00101	PANTHER:PTHR42811	PANTHER:PTHR42811:SF8	MetaCyc:PWY-6936	MetaCyc:PWY-7274
SMART:SM00971	SUPFAM:SSF51161	InterPro:Ser_AcTrfase_N	InterPro:Trimer_LpxA-like_sf	UniParc:UPI00029575E9	SEG:seg

Description

hypothetical protein

Coordinates

chr2:-:3954105..3958490

Molecular Weight (calculated)

44288.8 Da

IEP (calculated)

7.224

GRAVY (calculated)

0.091

Length

404 amino acids

Sequence
(BLAST)

001: MSRNKKGLKL KRTSCGISMT TENGTFGCMY LPSSPPFPLF IINNCCTLFL TANTTPPLLY NYNNNGCIDS TLSFFSYLLF SSITMSHLSH KTLVYLPEMR
101: PEHEAEEGQA NSLSSISSWP HRLENVFPVY AMGTSNPVLN SSLHISDCLD PIWDVVREEA KLEAEKEPIL SSFFHATILS HDCLEEALAF ALANRLQKPT
201: LLATQLMDIF SNVMKHDKGI QQSIRLDIQA FKDRNPACLL YCSALLFMKG YQSLQVYRVA HALWRQGRKV LAAALQSRVS EVFGVDIHPA AKIGDGILVD
301: HGTGVVIGET VIVGSRVSLM QGVTLGGTVK ETGDRHPKIS EGVLIGAHAT ILGNIRIGEC VMIAAGSLVL QEVPPHSIVA GVPAKVIGRV HEHYPSLTMQ
401: QDTI

Best Arabidopsis Sequence Match ( AT4G35640.1 )
(BLAST)

001: MACINGENRD FSSSSSLSSL PMIVSRNFSA RDDGETGDEF PFERIFPVYA RGTLNPVADP VLLDFTNSSY DPIWDSIREE AKLEAEEEPV LSSFLYASIL
101: SHDCLEQALS FVLANRLQNP TLLATQLMDI FCNVMVHDRG IQSSIRLDVQ AFKDRDPACL SYSSAILHLK GYLALQAYRV AHKLWKQGRK LLALALQSRV
201: SEVFGIDIHP AARIGKGILL DHGTGVVIGE TAVIGDRVSI LHGVTLGGTG KETGDRHPNI GDGALLGACV TILGNIKIGA GAMVAAGSLV LKDVPSHSMV
301: AGNPAKLIGF VDEQDPSMTM EHDATREFFQ NVAVAYRETI PNGSSVSGSC RERRH

Arabidopsis Description

SAT4SERAT3 [Source:UniProtKB/TrEMBL;Acc:A0A178USX0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.