CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 1
endoplasmic reticulum 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 21766870

msms PMID: 21766870 doi

S Komatsu, A Yamamoto, T Nakamura, MZ Nouri, Y Nanjo, K Nishizawa, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH76556	Soybean	cytosol	40.52	68.14
VIT_04s0210g00190.t01	Wine grape	cytosol	61.52	63.75
Bra024500.1-P	Field mustard	cytosol, peroxisome, plastid	58.31	62.89
CDY29188	Canola	cytosol, peroxisome, plastid	58.02	61.8
KRH28896	Soybean	mitochondrion	64.72	61.5
AT2G17640.1	Thale cress	cytosol	57.73	61.3
KRH69684	Soybean	mitochondrion	72.01	61.14
CDY07835	Canola	cytosol, peroxisome, plastid	57.14	60.87
Solyc02g082850.2.1	Tomato	cytosol	62.68	60.39
HORVU4Hr1G081310.6	Barley	mitochondrion	56.56	60.06
PGSC0003DMT400003992	Potato	cytosol	62.1	59.5
TraesCS5A01G501800.1	Wheat	cytosol	57.73	58.75
TraesCS4D01G327200.1	Wheat	cytosol	57.73	58.75
GSMUA_Achr5P19080_001	Banana	cytosol	57.73	58.41
TraesCS4B01G330300.1	Wheat	cytosol	57.14	57.99
AT4G35640.1	Thale cress	cytosol	59.18	57.18
Zm00001d027536_P003	Maize	cytoskeleton, cytosol, peroxisome	56.56	57.06
EER92913	Sorghum	cytosol	55.69	56.18
Os03t0133900-01	Rice	cytosol	55.98	54.24
KRH76559	Soybean	cytosol	21.28	51.41
KRH06519	Soybean	cytosol, mitochondrion, nucleus	38.48	46.15
KRH47957	Soybean	cytosol, mitochondrion, nucleus	38.19	45.8
CDY26432	Canola	cytosol	18.37	40.38
KRH00049	Soybean	mitochondrion	19.24	38.6
KRH73892	Soybean	mitochondrion	38.48	37.08
KRH14245	Soybean	mitochondrion	37.03	36.18
KRH05125	Soybean	mitochondrion	16.33	35.67
KRG98542	Soybean	mitochondrion	39.07	34.27
KRH46343	Soybean	mitochondrion	38.48	34.11

Protein Annotations

KEGG:00270+2.3.1.30	KEGG:00920+2.3.1.30	Gene3D:1.10.3130.10	EntrezGene:100778586	Gene3D:2.160.10.10	MapMan:4.1.4.2.1
EMBL:ACUP02010123	EnsemblPlantsGene:GLYMA_16G118800	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006535	GO:GO:0008150	GO:GO:0008152	GO:GO:0009001
GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	InterPro:Hexapep	InterPro:Hexapep_transf_CS	UniProt:K7MGT6
EnsemblPlants:KRH07931	ProteinID:KRH07931	ProteinID:KRH07931.1	PFAM:PF00132	PFAM:PF06426	ScanProsite:PS00101
PANTHER:PTHR42811	PANTHER:PTHR42811:SF8	MetaCyc:PWY-6936	MetaCyc:PWY-7274	SMART:SM00971	SUPFAM:SSF51161
InterPro:Ser_AcTrfase_N	InterPro:Ser_O-AcTrfase	TIGRFAMs:TIGR01172	InterPro:Trimer_LpxA-like_sf	UniParc:UPI000233EEEA	SEG:seg

Description

hypothetical protein

Coordinates

chr16:-:26469398..26473663

Molecular Weight (calculated)

37722.2 Da

IEP (calculated)

6.071

GRAVY (calculated)

-0.099

Length

343 amino acids

Sequence
(BLAST)

001: MAHLSHKTLV YLPEMRPEHE AEEGQPRKSL GSFSSWPHRL ENVFPVYAMG TSNPAVLDSS LHTSDCLDPI WDAVREEAKL EAEKEPILSS FFYATILSHD
101: CLEQALAFAL ANRLQNPTLL ATQLMDIFSN VMKHDKGIQQ SIRLDIQAFK DRDPACLSYC SALLYMKGYQ SLQVYRVAHA LWGQGRKVLA SALQSRVSEV
201: FGVDIHPAAK IGDGILVDHG TGVVIGETVV VGNRVSLMQG VTFGGTGKET GDRHPKISEG VLIGAHATIL GNITIGECVM IAAGSLVLQE VPPHSIVAGV
301: PAKVIGRVHE HYPSLTMQQD ENKHLSEEFF YSKDETTENY YIN

Best Arabidopsis Sequence Match ( AT4G35640.1 )
(BLAST)

001: MACINGENRD FSSSSSLSSL PMIVSRNFSA RDDGETGDEF PFERIFPVYA RGTLNPVADP VLLDFTNSSY DPIWDSIREE AKLEAEEEPV LSSFLYASIL
101: SHDCLEQALS FVLANRLQNP TLLATQLMDI FCNVMVHDRG IQSSIRLDVQ AFKDRDPACL SYSSAILHLK GYLALQAYRV AHKLWKQGRK LLALALQSRV
201: SEVFGIDIHP AARIGKGILL DHGTGVVIGE TAVIGDRVSI LHGVTLGGTG KETGDRHPNI GDGALLGACV TILGNIKIGA GAMVAAGSLV LKDVPSHSMV
301: AGNPAKLIGF VDEQDPSMTM EHDATREFFQ NVAVAYRETI PNGSSVSGSC RERRH

Arabidopsis Description

SAT4SERAT3 [Source:UniProtKB/TrEMBL;Acc:A0A178USX0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.