CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

nucleus 1
cytosol 5
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, nucleus
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 21132161
mitochondrion: 21766870

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 21766870 doi

S Komatsu, A Yamamoto, T Nakamura, MZ Nouri, Y Nanjo, K Nishizawa, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH06519	Soybean	cytosol, mitochondrion, nucleus	95.8	95.8
VIT_11s0016g02450.t01	Wine grape	cytosol	85.66	84.48
PGSC0003DMT400000764	Potato	cytosol	84.97	82.94
Solyc12g008780.1.1	Tomato	cytosol	84.97	82.94
AT5G56760.1	Thale cress	cytosol	81.47	74.68
Bra002793.1-P	Field mustard	cytosol	80.42	74.68
GSMUA_Achr2P09310_001	Banana	cytosol, peroxisome, plastid	79.02	74.1
CDY32882	Canola	cytoskeleton, cytosol, nucleus	79.72	74.03
CDY32760	Canola	cytosol	79.72	74.03
Bra006857.1-P	Field mustard	cytosol	79.72	73.79
CDY11904	Canola	cytosol	79.72	73.79
CDX88588	Canola	cytosol	79.72	73.55
GSMUA_Achr8P27570_001	Banana	plastid	66.78	72.9
HORVU0Hr1G022440.1	Barley	mitochondrion	73.08	68.98
TraesCS3B01G321600.1	Wheat	cytosol	73.08	68.98
TraesCS3D01G286900.1	Wheat	mitochondrion	72.73	68.65
TraesCS3A01G287400.1	Wheat	mitochondrion	72.73	68.65
TraesCS1A01G353800.1	Wheat	cytosol	74.83	68.37
TraesCS1D01G356800.1	Wheat	cytosol	74.83	67.94
Os05t0533500-01	Rice	cytosol	73.78	67.2
EES19864	Sorghum	cytosol	75.17	66.98
Zm00001d011735_P001	Maize	cytosol, mitochondrion	72.38	66.77
OQU87436	Sorghum	cytosol, mitochondrion, peroxisome, plastid	72.73	66.03
GSMUA_Achr4P01080_001	Banana	cytosol	45.1	62.93
Zm00001d038737_P001	Maize	extracellular	74.48	60.68
KRH00049	Soybean	mitochondrion	32.87	54.97
KRH05125	Soybean	mitochondrion	29.72	54.14
HORVU0Hr1G035820.1	Barley	plastid	73.08	52.64
KRH76556	Soybean	cytosol	36.71	51.47
KRH14245	Soybean	mitochondrion	58.74	47.86
KRH73892	Soybean	mitochondrion	58.39	46.91
KRH46343	Soybean	mitochondrion	60.49	44.7
KRG98542	Soybean	mitochondrion	59.44	43.48
KRH07931	Soybean	cytosol, mitochondrion	45.8	38.19
KRH28896	Soybean	mitochondrion	47.9	37.95
KRH69684	Soybean	mitochondrion	44.41	31.44
KRH76559	Soybean	cytosol	9.79	19.72

Protein Annotations

KEGG:00270+2.3.1.30	KEGG:00920+2.3.1.30	Gene3D:1.10.3130.10	EntrezGene:100815091	Gene3D:2.160.10.10	MapMan:4.1.4.2.1
PDB:4N69	PDB:4N6A	PDB:4N6B	EMBL:ACUP02004185	EnsemblPlantsGene:GLYMA_07G058800	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0006535	GO:GO:0008150	GO:GO:0008152	GO:GO:0009001	GO:GO:0009058	GO:GO:0009987
GO:GO:0016740	GO:GO:0019344	InterPro:Hexapep	InterPro:Hexapep_transf_CS	UniProt:I1KHY6	EnsemblPlants:KRH47957
ProteinID:KRH47957	ProteinID:KRH47957.1	PFAM:PF00132	PFAM:PF06426	PIRSF:PIRSF000441	ScanProsite:PS00101
PANTHER:PTHR42811	PANTHER:PTHR42811:SF9	MetaCyc:PWY-6936	MetaCyc:PWY-7274	SMART:SM00971	SUPFAM:SSF51161
InterPro:Ser_AcTrfase_N	InterPro:Ser_O-AcTrfase	TIGRFAMs:TIGR01172	InterPro:Trimer_LpxA-like_sf	UniParc:UPI00023C7221	SEG:seg

Description

hypothetical protein

Coordinates

chr7:+:5264781..5266400

Molecular Weight (calculated)

30385.4 Da

IEP (calculated)

7.405

GRAVY (calculated)

0.096

Length

286 amino acids

Sequence
(BLAST)

001: MPTGLPKANS SVAPDDQGWL WTQIKAEARR DAELEPALAS YLYSTILSHS SLVRSLSFHL GNKLCSSTLL STLLYDLFLN AFSFDPSLCS AAVADLRAAR
101: ERDPACVSYS HCLLNYKGFL ACQAHRVAHL LWRQSRQPLA LALHSRIADV FAVDIHPAAR IGKGILFDHA TGVVVGETAV IGNNVSILHH VTLGGTGKVG
201: GDRHPKIGDG VLIGAGATIL GNIKIGEGAK VGAGSVVLID VPPQTTAVGN PARLVGGKEK PSKHEDVPGE SMDHTSFISE WSDYII

Best Arabidopsis Sequence Match ( AT5G56760.1 )
(BLAST)

001: MPPAGELRHQ SPSKEKLSSV TQSDEAEAAS AAISAAAADA EAAGLWTQIK AEARRDAEAE PALASYLYST ILSHSSLERS ISFHLGNKLC SSTLLSTLLY
101: DLFLNTFSSD PSLRNATVAD LRAARVRDPA CISFSHCLLN YKGFLAIQAH RVSHKLWTQS RKPLALALHS RISDVFAVDI HPAAKIGKGI LLDHATGVVV
201: GETAVIGNNV SILHHVTLGG TGKACGDRHP KIGDGCLIGA GATILGNVKI GAGAKVGAGS VVLIDVPCRG TAVGNPARLV GGKEKPTIHD EECPGESMDH
301: TSFISEWSDY II

Arabidopsis Description

SAT5Serine acetyltransferase 5 [Source:UniProtKB/Swiss-Prot;Acc:Q42538]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.