CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
cytosol 2
mitochondrion 7

Predictors

GFP

MS/MS

Papers

mitochondrion: 21766870

msms PMID: 21766870 doi

S Komatsu, A Yamamoto, T Nakamura, MZ Nouri, Y Nanjo, K Nishizawa, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG98542
KRH00049
KRH05125
KRH14245
KRH46343
KRH50190
KRH71273
KRH73892

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G55920.1	KRG98542	AT1G55920.1	9076992
AT1G55920.1	KRH00049	AT1G55920.1	9076992
AT1G55920.1	KRH05125	AT1G55920.1	9076992
AT1G55920.1	KRH14245	AT1G55920.1	9076992
AT1G55920.1	KRH46343	AT1G55920.1	9076992
AT1G55920.1	KRH73892	AT1G55920.1	9076992
AT3G13110.1	KRG98542	AT3G13110.1	11168407
AT3G13110.1	KRH00049	AT3G13110.1	11168407
AT3G13110.1	KRH05125	AT3G13110.1	11168407
AT3G13110.1	KRH14245	AT3G13110.1	11168407
AT3G13110.1	KRH46343	AT3G13110.1	11168407
AT3G13110.1	KRH73892	AT3G13110.1	11168407
AT3G13110.1	KRH50190	AT3G59760.1	11168407
AT3G13110.1	KRH71273	AT3G59760.1	11168407
AT3G13110.1	KRH50190	AT3G59760.1	12063244
AT3G13110.1	KRH71273	AT3G59760.1	12063244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH14245	Soybean	mitochondrion	75.0	76.07
CDY52913	Canola	cytosol	50.0	67.17
Bra038031.1-P	Field mustard	cytosol	53.37	64.19
AT1G55920.1	Thale cress	cytosol	55.34	62.74
KRH00049	Soybean	mitochondrion	29.78	61.99
CDY53752	Canola	cytosol	53.09	61.36
Solyc07g065340.1.1	Tomato	cytosol	56.18	60.42
PGSC0003DMT400057095	Potato	cytosol	55.9	60.12
CDY08269	Canola	cytosol	52.25	59.05
CDX84336	Canola	cytosol	52.25	59.05
KRH06519	Soybean	cytosol, mitochondrion, nucleus	47.19	58.74
GSMUA_Achr6P24840_001	Banana	cytosol	26.97	58.54
CDY10517	Canola	cytosol	53.09	58.51
Bra037094.1-P	Field mustard	cytosol	51.69	58.41
KRH47957	Soybean	cytosol, mitochondrion, nucleus	46.91	58.39
Bra030821.1-P	Field mustard	cytosol	52.81	58.39
CDY26079	Canola	cytosol	51.97	57.81
CDY42400	Canola	cytosol	51.97	57.45
KRH05125	Soybean	mitochondrion	25.28	57.32
KRH46343	Soybean	mitochondrion	61.52	56.59
KRG98542	Soybean	mitochondrion	61.8	56.27
VIT_19s0015g00130.t01	Wine grape	mitochondrion	59.27	55.97
Solyc10g006040.1.1	Tomato	extracellular	55.62	54.25
PGSC0003DMT400037270	Potato	plastid	55.06	53.7
AT3G13110.1	Thale cress	mitochondrion, plastid	57.58	52.43
GSMUA_AchrUn_...	Banana	cytosol	35.96	52.24
KRH76556	Soybean	cytosol	28.65	50.0
Bra034705.1-P	Field mustard	plastid	54.78	49.62
Zm00001d028154_P001	Maize	cytosol	43.54	49.36
EER92698	Sorghum	cytosol	42.42	48.55
HORVU4Hr1G071040.1	Barley	cytosol, mitochondrion	42.13	47.77
TraesCS4B01G263300.1	Wheat	mitochondrion	41.29	47.57
TraesCS4A01G042700.1	Wheat	cytosol, mitochondrion	41.29	46.82
Os03t0196600-01	Rice	cytosol, plasma membrane	41.29	46.67
TraesCS4D01G263500.1	Wheat	cytosol, mitochondrion	40.73	46.18
Os03t0185000-00	Rice	cytosol, plasma membrane	37.36	44.19
KRH07931	Soybean	cytosol, mitochondrion	37.08	38.48
KRH28896	Soybean	mitochondrion	38.48	37.95
KRH69684	Soybean	mitochondrion	35.96	31.68
KRH76559	Soybean	cytosol	10.39	26.06

Protein Annotations

KEGG:00270+2.3.1.30	KEGG:00920+2.3.1.30	Gene3D:1.10.3130.10	Gene3D:2.160.10.10	MapMan:4.1.4.2.1	EMBL:ACUP02001289
EnsemblPlantsGene:GLYMA_02G299100	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0006535	GO:GO:0008150	GO:GO:0008152	GO:GO:0009001
GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0019344	InterPro:Hexapep	InterPro:Hexapep_transf_CS
UniProt:I1JJI6	EnsemblPlants:KRH73892	ProteinID:KRH73892	ProteinID:KRH73892.1	PFAM:PF00132	PFAM:PF06426
ScanProsite:PS00101	PANTHER:PTHR42811	PANTHER:PTHR42811:SF2	MetaCyc:PWY-6936	MetaCyc:PWY-7274	SMART:SM00971
SUPFAM:SSF51161	InterPro:Ser_AcTrfase_N	InterPro:Ser_O-AcTrfase	TIGRFAMs:TIGR01172	InterPro:Trimer_LpxA-like_sf	UniParc:UPI0002337571
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:47615800..47617497

Molecular Weight (calculated)

38703.5 Da

IEP (calculated)

8.204

GRAVY (calculated)

-0.117

Length

356 amino acids

Sequence
(BLAST)

001: MMRRHSLVTA SPKQVSLFFV GHKSNPTTIH PHTHTLLTPS PKQDPQNHNQ WWGHPKTIKP SFNHSRIRFN TLHTGSTEEQ VETGEVEVDV WTKMQEEAKL
101: DVTEEPILSN YYNTSILSHK TLETALANHL AINLSSTSLP SSTLSDLFVT VLETDQAIMD AVKCDLRAVK ERDPACISHV HCFLNFKGFL ACQAHRVAHK
201: LWLQGRKILA VMIQNRVSEI FAVDVHPGAR IGSGILLDHA TGIVVGETAV IGNNVSILHS VTLGGTGKVS GDRHPKIGDG VLIGAGTCIL GNIKVGDGAK
301: IGAGSVVIKD VPPRTTVVGN PAKLVGGKNN PVKLDKIPSF TMDHTSHIAD FYDYCV

Best Arabidopsis Sequence Match ( AT3G13110.1 )
(BLAST)

001: MLPVTSRRHF TMSLYMLRSS SPHINHHSFL LPSFVSSKFK HHTLSPPPSP PPPPPMAACI DTCRTGKPQI SPRDSSKHHD DESGFRYMNY FRYPDRSSFN
101: GTQTKTLHTR PLLEDLDRDA EVDDVWAKIR EEAKSDIAKE PIVSAYYHAS IVSQRSLEAA LANTLSVKLS NLNLPSNTLF DLFSGVLQGN PDIVESVKLD
201: LLAVKERDPA CISYVHCFLH FKGFLACQAH RIAHELWTQD RKILALLIQN RVSEAFAVDF HPGAKIGTGI LLDHATAIVI GETAVVGNNV SILHNVTLGG
301: TGKQCGDRHP KIGDGVLIGA GTCILGNITI GEGAKIGAGS VVLKDVPPRT TAVGNPARLL GGKDNPKTHD KIPGLTMDQT SHISEWSDYV I

Arabidopsis Description

SAT3Serine acetyltransferase 3, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q39218]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.