Factsheet for VIT_19s0015g00130.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 5
cytosol 2
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0194g00120.t01
VIT_05s0094g00780.t01
VIT_19s0015g00130.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G55920.1	VIT_00s0194g00120.t01	AT1G55920.1	9076992
AT1G55920.1	VIT_19s0015g00130.t01	AT1G55920.1	9076992
AT3G13110.1	VIT_00s0194g00120.t01	AT3G13110.1	11168407
AT3G13110.1	VIT_19s0015g00130.t01	AT3G13110.1	11168407
AT3G13110.1	VIT_05s0094g00780.t01	AT3G59760.1	11168407
AT3G13110.1	VIT_05s0094g00780.t01	AT3G59760.1	12063244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY52913	Canola	cytosol	53.32	75.85
PGSC0003DMT400057095	Potato	cytosol	63.93	72.81
Solyc07g065340.1.1	Tomato	cytosol	63.93	72.81
Bra038031.1-P	Field mustard	cytosol	55.17	70.27
CDX84336	Canola	cytosol	57.29	68.57
CDY10517	Canola	cytosol	58.36	68.11
CDY08269	Canola	cytosol	56.76	67.94
CDY53752	Canola	cytosol	55.44	67.86
Bra037094.1-P	Field mustard	cytosol	56.5	67.62
AT1G55920.1	Thale cress	cytosol	56.23	67.52
CDY26079	Canola	cytosol	57.29	67.5
Bra030821.1-P	Field mustard	cytosol	57.29	67.08
CDY42400	Canola	cytosol	57.03	66.77
KRG98542	Soybean	mitochondrion	66.58	64.19
Solyc10g006040.1.1	Tomato	extracellular	62.07	64.11
KRH46343	Soybean	mitochondrion	65.78	64.08
GSMUA_Achr6P24840_001	Banana	cytosol	27.59	63.41
VIT_00s0194g00120.t01	Wine grape	plastid	51.19	63.07
PGSC0003DMT400037270	Potato	plastid	61.01	63.01
VIT_11s0016g02450.t01	Wine grape	cytosol	45.89	59.66
KRH73892	Soybean	mitochondrion	55.97	59.27
KRH14245	Soybean	mitochondrion	54.11	58.12
Bra034705.1-P	Field mustard	plastid	59.68	57.25
AT3G13110.1	Thale cress	mitochondrion, plastid	58.62	56.52
GSMUA_AchrUn_...	Banana	cytosol	36.6	56.33
HORVU4Hr1G071040.1	Barley	cytosol, mitochondrion	44.83	53.82
TraesCS4B01G263300.1	Wheat	mitochondrion	44.03	53.72
TraesCS4D01G263500.1	Wheat	cytosol, mitochondrion	44.03	52.87
EER92698	Sorghum	cytosol	43.24	52.41
TraesCS4A01G042700.1	Wheat	cytosol, mitochondrion	43.5	52.23
Zm00001d028154_P001	Maize	cytosol	42.97	51.59
Os03t0196600-01	Rice	cytosol, plasma membrane	42.44	50.79
Os03t0185000-00	Rice	cytosol, plasma membrane	40.05	50.17
VIT_04s0210g00190.t01	Wine grape	cytosol	35.81	40.79

Protein Annotations

KEGG:00270+2.3.1.30	KEGG:00920+2.3.1.30	Gene3D:1.10.3130.10	EntrezGene:100246391	wikigene:100246391	Gene3D:2.160.10.10
MapMan:4.1.4.2.1	EMBL:AM441360	ProteinID:CAN73952	ProteinID:CAN73952.1	ProteinID:CCB61991	ProteinID:CCB61991.1
UniProt:F6I536	EMBL:FN596747	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006535	GO:GO:0008150	GO:GO:0008152
GO:GO:0009001	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0016746	GO:GO:0019344
InterPro:Hexapep	InterPro:Hexapep_transf_CS	EntrezGene:LOC100246391	wikigene:LOC100246391	PFAM:PF00132	PFAM:PF06426
ScanProsite:PS00101	PANTHER:PTHR42811	PANTHER:PTHR42811:SF2	SMART:SM00971	SUPFAM:SSF51161	InterPro:Ser_AcTrfase_N
InterPro:Ser_O-AcTrfase	TIGR:TC55574	TIGRFAMs:TIGR01172	InterPro:Trimer_LpxA-like_sf	UniParc:UPI0001985778	ArrayExpress:VIT_19s0015g00130
EnsemblPlantsGene:VIT_19s0015g00130	EnsemblPlants:VIT_19s0015g00130.t01	unigene:Vvi.19014	RefSeq:XP_002264933	RefSeq:XP_002264933.2	RefSeq:XP_010644549.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr19:-:8107785..8109126

Molecular Weight (calculated)

40820.1 Da

IEP (calculated)

7.328

GRAVY (calculated)

-0.084

Length

377 amino acids

Sequence
(BLAST)

001: MKLQATSGTL SLIRYNPPPF SPPHRCTTPF SLPKHRLFMA ACIDTSRAET AQTNQLSCEP NGSQLDDHMY KFANFCRPSF SDLVSCVPMS QNGRKRIHTS
101: TVEDDLCGAD LWLKIQDEAR SDVEQEPILS SYYYSLILSH KSLESALANH LSIKLSNSSL PSSTLYDLFM GVLVEDGEIM GAVKDDLRAV KERDPACISY
201: VQCLVNFKGF LACQAHRVAH RLWSQGRKIL ALVIQNRVSE AFAVDIHPGA KIGRGILLDH ATGVVIGETA VIGDDVSILH NVTLGGTGKV SGDRHPKLGD
301: GVLIGAGTCI LGNVRIGDGA KVGAGSVVLK EVPPKTTAVG NPARLVGGKE NPIKLDKIPS FTMDQTSHIS EWSDYVI

Best Arabidopsis Sequence Match ( AT1G55920.1 )
(BLAST)

001: MATCIDTCRT GNTQDDDSRF CCIKNFFRPG FSVNRKIHHT QIEDDDDVWI KMLEEAKSDV KQEPILSNYY YASITSHRSL ESALAHILSV KLSNLNLPSN
101: TLFELFISVL EESPEIIEST KQDLIAVKER DPACISYVHC FLGFKGFLAC QAHRIAHTLW KQNRKIVALL IQNRVSESFA VDIHPGAKIG KGILLDHATG
201: VVIGETAVVG DNVSILHGVT LGGTGKQSGD RHPKIGDGVL IGAGSCILGN ITIGEGAKIG SGSVVVKDVP ARTTAVGNPA RLIGGKENPR KHDKIPCLTM
301: DQTSYLTEWS DYVI

Arabidopsis Description

SAT1Serine acetyltransferase 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q42588]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.