CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 5
cytosol 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

mitochondrion: 21766870

msms PMID: 21766870 doi

S Komatsu, A Yamamoto, T Nakamura, MZ Nouri, Y Nanjo, K Nishizawa, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG98542
KRH00049
KRH05125
KRH14245
KRH46343
KRH50190
KRH71273
KRH73892

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G55920.1	KRG98542	AT1G55920.1	9076992
AT1G55920.1	KRH00049	AT1G55920.1	9076992
AT1G55920.1	KRH05125	AT1G55920.1	9076992
AT1G55920.1	KRH14245	AT1G55920.1	9076992
AT1G55920.1	KRH46343	AT1G55920.1	9076992
AT1G55920.1	KRH73892	AT1G55920.1	9076992
AT3G13110.1	KRG98542	AT3G13110.1	11168407
AT3G13110.1	KRH00049	AT3G13110.1	11168407
AT3G13110.1	KRH05125	AT3G13110.1	11168407
AT3G13110.1	KRH14245	AT3G13110.1	11168407
AT3G13110.1	KRH46343	AT3G13110.1	11168407
AT3G13110.1	KRH73892	AT3G13110.1	11168407
AT3G13110.1	KRH50190	AT3G59760.1	11168407
AT3G13110.1	KRH71273	AT3G59760.1	11168407
AT3G13110.1	KRH50190	AT3G59760.1	12063244
AT3G13110.1	KRH71273	AT3G59760.1	12063244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG98542	Soybean	mitochondrion	87.86	86.96
CDY52913	Canola	cytosol	49.61	72.45
PGSC0003DMT400057095	Potato	cytosol	60.47	70.69
Solyc07g065340.1.1	Tomato	cytosol	60.47	70.69
KRH00049	Soybean	mitochondrion	31.01	70.18
Bra038031.1-P	Field mustard	cytosol	52.2	68.24
KRH05125	Soybean	mitochondrion	27.39	67.52
AT1G55920.1	Thale cress	cytosol	53.49	65.92
VIT_19s0015g00130.t01	Wine grape	mitochondrion	64.08	65.78
CDX84336	Canola	cytosol	52.97	65.08
CDY08269	Canola	cytosol	52.97	65.08
CDY53752	Canola	cytosol	51.68	64.94
Bra037094.1-P	Field mustard	cytosol	52.45	64.44
CDY26079	Canola	cytosol	53.23	64.38
Bra030821.1-P	Field mustard	cytosol	53.23	63.98
CDY10517	Canola	cytosol	53.23	63.78
CDY42400	Canola	cytosol	52.71	63.35
KRH73892	Soybean	mitochondrion	56.59	61.52
KRH06519	Soybean	cytosol, mitochondrion, nucleus	45.22	61.19
GSMUA_Achr6P24840_001	Banana	cytosol	25.84	60.98
KRH47957	Soybean	cytosol, mitochondrion, nucleus	44.7	60.49
Solyc10g006040.1.1	Tomato	extracellular	56.85	60.27
PGSC0003DMT400037270	Potato	plastid	56.33	59.73
KRH14245	Soybean	mitochondrion	52.97	58.4
AT3G13110.1	Thale cress	mitochondrion, plastid	55.81	55.24
GSMUA_AchrUn_...	Banana	cytosol	34.88	55.1
Bra034705.1-P	Field mustard	plastid	55.04	54.2
KRH76556	Soybean	cytosol	27.65	52.45
TraesCS4B01G263300.1	Wheat	mitochondrion	41.09	51.46
HORVU4Hr1G071040.1	Barley	cytosol, mitochondrion	41.09	50.64
EER92698	Sorghum	cytosol	40.57	50.48
Zm00001d028154_P001	Maize	cytosol	40.83	50.32
TraesCS4D01G263500.1	Wheat	cytosol, mitochondrion	40.57	50.0
TraesCS4A01G042700.1	Wheat	cytosol, mitochondrion	40.31	49.68
Os03t0196600-01	Rice	cytosol, plasma membrane	40.05	49.21
Os03t0185000-00	Rice	cytosol, plasma membrane	37.21	47.84
KRH28896	Soybean	mitochondrion	35.92	38.5
KRH07931	Soybean	cytosol, mitochondrion	34.11	38.48
KRH69684	Soybean	mitochondrion	34.63	33.17
KRH76559	Soybean	cytosol	8.53	23.24

Protein Annotations

KEGG:00270+2.3.1.30	KEGG:00920+2.3.1.30	Gene3D:1.10.3130.10	EntrezGene:100779106	Gene3D:2.160.10.10	MapMan:4.1.4.2.1
EMBL:ACUP02005339	EnsemblPlantsGene:GLYMA_08G327400	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006535	GO:GO:0008150	GO:GO:0008152
GO:GO:0009001	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0016746	GO:GO:0019344
InterPro:Hexapep	InterPro:Hexapep_transf_CS	UniProt:I1KYI0	EnsemblPlants:KRH46343	ProteinID:KRH46343	ProteinID:KRH46343.1
PFAM:PF00132	PFAM:PF06426	ScanProsite:PS00101	PANTHER:PTHR42811	PANTHER:PTHR42811:SF2	MetaCyc:PWY-6936
MetaCyc:PWY-7274	SMART:SM00971	SUPFAM:SSF51161	InterPro:Ser_AcTrfase_N	InterPro:Ser_O-AcTrfase	TIGRFAMs:TIGR01172
InterPro:Trimer_LpxA-like_sf	UniParc:UPI0002338DE5	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr8:-:44545377..44547186

Molecular Weight (calculated)

42169.8 Da

IEP (calculated)

7.177

GRAVY (calculated)

0.023

Length

387 amino acids

Sequence
(BLAST)

001: MNVLALGRFL TSPLYKSSPL TPSPIQFTPI FLHPPKFQSL YSIHPFSLSM ATCVDASTPL SRKPNGSQSD DHSFNYMKFC RPSFSDRVPC MPICKNRDTA
101: FTRVEEFDTR VENHVEVDVV EGVDLWLKIQ EEARLDVDQE PILSSYYFSS ILSHKSLESA LANHLSTNLS SLSLPSSTLY DLFMGVFADD NDIIGAVKDD
201: LIAVKERDPA CISYVHCLLN FKGFLACQAH RIAHKLWLQG RKVLALLIQN RVSDVFAVDI HPGAKIGRGI LLDHATGLVV GETAVIGNNV SILHNVTLGG
301: TGKASGDRHP KIGDGVLIGA GTCILGNIKI GDGAKIGACS VVLKEVPPRT TAVGNPARLV GGKDNPIKLD KMPSFTMDHT SWSDYVI

Best Arabidopsis Sequence Match ( AT1G55920.1 )
(BLAST)

001: MATCIDTCRT GNTQDDDSRF CCIKNFFRPG FSVNRKIHHT QIEDDDDVWI KMLEEAKSDV KQEPILSNYY YASITSHRSL ESALAHILSV KLSNLNLPSN
101: TLFELFISVL EESPEIIEST KQDLIAVKER DPACISYVHC FLGFKGFLAC QAHRIAHTLW KQNRKIVALL IQNRVSESFA VDIHPGAKIG KGILLDHATG
201: VVIGETAVVG DNVSILHGVT LGGTGKQSGD RHPKIGDGVL IGAGSCILGN ITIGEGAKIG SGSVVVKDVP ARTTAVGNPA RLIGGKENPR KHDKIPCLTM
301: DQTSYLTEWS DYVI

Arabidopsis Description

SAT1Serine acetyltransferase 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q42588]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.