CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 5

Predictors

GFP

MS/MS

Papers

mitochondrion: 21766870

msms PMID: 21766870 doi

S Komatsu, A Yamamoto, T Nakamura, MZ Nouri, Y Nanjo, K Nishizawa, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH76556	Soybean	cytosol	52.63	93.14
Bra024500.1-P	Field mustard	cytosol, peroxisome, plastid	61.22	69.5
VIT_04s0210g00190.t01	Wine grape	cytosol	63.16	68.88
CDY29188	Canola	cytosol, peroxisome, plastid	61.22	68.63
CDY07835	Canola	cytosol, peroxisome, plastid	60.66	68.01
AT2G17640.1	Thale cress	cytosol	59.56	66.56
PGSC0003DMT400003992	Potato	cytosol	64.82	65.36
Solyc02g082850.2.1	Tomato	cytosol	64.27	65.17
KRH07931	Soybean	cytosol, mitochondrion	61.5	64.72
HORVU4Hr1G081310.6	Barley	mitochondrion	57.89	64.71
AT4G35640.1	Thale cress	cytosol	61.5	62.54
Zm00001d027536_P003	Maize	cytoskeleton, cytosol, peroxisome	58.73	62.35
TraesCS5A01G501800.1	Wheat	cytosol	57.89	62.02
TraesCS4D01G327200.1	Wheat	cytosol	57.89	62.02
TraesCS4B01G330300.1	Wheat	cytosol	57.89	61.83
EER92913	Sorghum	cytosol	58.17	61.76
GSMUA_Achr5P19080_001	Banana	cytosol	57.89	61.65
Os03t0133900-01	Rice	cytosol	59.28	60.45
KRH76559	Soybean	cytosol	22.16	56.34
KRH69684	Soybean	mitochondrion	58.17	51.98
KRH06519	Soybean	cytosol, mitochondrion, nucleus	38.23	48.25
KRH47957	Soybean	cytosol, mitochondrion, nucleus	37.95	47.9
CDY26432	Canola	cytosol	18.84	43.59
KRH00049	Soybean	mitochondrion	19.67	41.52
KRH05125	Soybean	mitochondrion	16.9	38.85
KRH73892	Soybean	mitochondrion	37.95	38.48
KRH14245	Soybean	mitochondrion	36.01	37.04
KRG98542	Soybean	mitochondrion	39.34	36.32
KRH46343	Soybean	mitochondrion	38.5	35.92

Protein Annotations

KEGG:00270+2.3.1.30	KEGG:00920+2.3.1.30	Gene3D:1.10.3130.10	EntrezGene:100775449	Gene3D:2.160.10.10	MapMan:4.1.4.2.1
EMBL:ACUP02006769	EnsemblPlantsGene:GLYMA_11G084100	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006535	GO:GO:0008150	GO:GO:0008152
GO:GO:0009001	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0019344	InterPro:Hexapep
InterPro:Hexapep_transf_CS	UniProt:K7LNN3	EnsemblPlants:KRH28896	ProteinID:KRH28896	ProteinID:KRH28896.1	PFAM:PF00132
PFAM:PF06426	ScanProsite:PS00101	PANTHER:PTHR42811	PANTHER:PTHR42811:SF8	MetaCyc:PWY-6936	MetaCyc:PWY-7274
SMART:SM00971	SUPFAM:SSF51161	InterPro:Ser_AcTrfase_N	InterPro:Ser_O-AcTrfase	TIGRFAMs:TIGR01172	InterPro:Trimer_LpxA-like_sf
UniParc:UPI000233D58B	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr11:+:6320131..6325155

Molecular Weight (calculated)

39361.3 Da

IEP (calculated)

6.767

GRAVY (calculated)

-0.116

Length

361 amino acids

Sequence
(BLAST)

001: MACLSRYHHH HHPRGATWLS SPDEMLQHCP LSAHHRRLRD DDAEPIYLPS LSSAYRIFPV YAMGAPDPTP EPELDGPDPI WNAVRDEAKL EAEKEPILSS
101: FLYASILAHD CLEQALAFVA ANRLQNPTLL ATQLMDIFCN VILHDKAIQR SIRLDVQAFK DRDPACLSYC SALLYMKGYH ALQVHRVAHT LWHQGRKVLA
201: LALQSRVSEV FGVDIHPAAK IGEGILLDHG TGVVIGETAI VGNRVSLMHG VTLGGTGKEI GDRHPKVGEG ALIGASATIL GNIKIGEGAM IAAGSLVLKD
301: VPPHCIAAGI PAKVISGLQE HDPSLTMKHD ATKDFFTHVA TNFRDEKPNG AQHPDRNEVN I

Best Arabidopsis Sequence Match ( AT4G35640.1 )
(BLAST)

001: MACINGENRD FSSSSSLSSL PMIVSRNFSA RDDGETGDEF PFERIFPVYA RGTLNPVADP VLLDFTNSSY DPIWDSIREE AKLEAEEEPV LSSFLYASIL
101: SHDCLEQALS FVLANRLQNP TLLATQLMDI FCNVMVHDRG IQSSIRLDVQ AFKDRDPACL SYSSAILHLK GYLALQAYRV AHKLWKQGRK LLALALQSRV
201: SEVFGIDIHP AARIGKGILL DHGTGVVIGE TAVIGDRVSI LHGVTLGGTG KETGDRHPNI GDGALLGACV TILGNIKIGA GAMVAAGSLV LKDVPSHSMV
301: AGNPAKLIGF VDEQDPSMTM EHDATREFFQ NVAVAYRETI PNGSSVSGSC RERRH

Arabidopsis Description

SAT4SERAT3 [Source:UniProtKB/TrEMBL;Acc:A0A178USX0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.