Factsheet for VIT_04s0210g00190.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH76556	Soybean	cytosol	45.62	74.02
HORVU4Hr1G081310.6	Barley	mitochondrion	65.56	67.18
Bra024500.1-P	Field mustard	cytosol, peroxisome, plastid	63.14	65.72
AT2G17640.1	Thale cress	cytosol	63.14	64.71
TraesCS5A01G501800.1	Wheat	cytosol	65.86	64.69
GSMUA_Achr5P19080_001	Banana	cytosol	66.16	64.6
CDY29188	Canola	cytosol, peroxisome, plastid	62.84	64.6
PGSC0003DMT400003992	Potato	cytosol	69.79	64.53
TraesCS4B01G330300.1	Wheat	cytosol	65.86	64.5
TraesCS4D01G327200.1	Wheat	cytosol	65.56	64.39
Solyc02g082850.2.1	Tomato	cytosol	69.18	64.33
CDY07835	Canola	cytosol, peroxisome, plastid	62.24	63.98
KRH28896	Soybean	mitochondrion	68.88	63.16
Zm00001d027536_P003	Maize	cytoskeleton, cytosol, peroxisome	63.44	61.76
KRH07931	Soybean	cytosol, mitochondrion	63.75	61.52
EER92913	Sorghum	cytosol	62.84	61.18
Os03t0133900-01	Rice	cytosol	64.35	60.17
AT4G35640.1	Thale cress	cytosol	62.84	58.59
KRH69684	Soybean	mitochondrion	58.01	47.52
VIT_11s0016g02450.t01	Wine grape	cytosol	40.79	46.55
KRH76559	Soybean	cytosol	19.94	46.48
CDY26432	Canola	cytosol	20.54	43.59
VIT_00s0194g00120.t01	Wine grape	plastid	37.76	40.85
VIT_19s0015g00130.t01	Wine grape	mitochondrion	40.79	35.81

Protein Annotations

KEGG:00270+2.3.1.30	KEGG:00920+2.3.1.30	Gene3D:1.10.3130.10	EntrezGene:100233047	wikigene:100233047	Gene3D:2.160.10.10
MapMan:4.1.4.2.1	ProteinID:ABY86367	ProteinID:ABY86367.1	ProteinID:CCB61045	ProteinID:CCB61045.1	EMBL:EU275238
UniProt:F6I278	EMBL:FN596531	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006535	GO:GO:0008150	GO:GO:0008152
GO:GO:0009001	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0016746	GO:GO:0019344
InterPro:Hexapep	InterPro:Hexapep_transf_CS	EntrezGene:LOC100233047	wikigene:LOC100233047	PFAM:PF00132	PFAM:PF06426
PIRSF:PIRSF000441	ScanProsite:PS00101	PANTHER:PTHR42811	PANTHER:PTHR42811:SF8	SMART:SM00971	SUPFAM:SSF51161
InterPro:Ser_AcTrfase_N	InterPro:Ser_O-AcTrfase	TIGR:TC53325	TIGRFAMs:TIGR01172	InterPro:Trimer_LpxA-like_sf	UniParc:UPI000210A816
ArrayExpress:VIT_04s0210g00190	EnsemblPlantsGene:VIT_04s0210g00190	EnsemblPlants:VIT_04s0210g00190.t01	unigene:Vvi.25951	unigene:Vvi.499	RefSeq:XP_003631907
RefSeq:XP_003631907.1	:	:	:	:	:

Description

No Description!

Coordinates

chr4:+:20557032..20562289

Molecular Weight (calculated)

35850.3 Da

IEP (calculated)

5.855

GRAVY (calculated)

-0.003

Length

331 amino acids

Sequence
(BLAST)

001: MPLLQGETPD FSASKSMEYR MEKLFPVYAM GLSKANVGGD VSLEILDSIV GDPIWDAVRE EAKLEAEKEP ILSSFLYASI LSHDCLEQAL AFVLANRLHN
101: LTLLATQLMD IIGKVILNDR DIQRAIRLDM QAFKDRDPSC LSHCSVLLYL KGYHSLQSYR VAHALWNHGR KELALALQSR ISEVFGVDIH PAAQIGEEIL
201: LDHATGVVIG ETAVVGNRVS LMQGVTLGGS GKEIGDRHPK VAQGALIGAS ATILGNIKIG EGAMIAAGSL VLKDVPPHSM VAGIPARLIG HVHEQDPSLT
301: MKHDATKDYF EHAMDGQSTG AMDATRNDKE T

Best Arabidopsis Sequence Match ( AT4G35640.1 )
(BLAST)

001: MACINGENRD FSSSSSLSSL PMIVSRNFSA RDDGETGDEF PFERIFPVYA RGTLNPVADP VLLDFTNSSY DPIWDSIREE AKLEAEEEPV LSSFLYASIL
101: SHDCLEQALS FVLANRLQNP TLLATQLMDI FCNVMVHDRG IQSSIRLDVQ AFKDRDPACL SYSSAILHLK GYLALQAYRV AHKLWKQGRK LLALALQSRV
201: SEVFGIDIHP AARIGKGILL DHGTGVVIGE TAVIGDRVSI LHGVTLGGTG KETGDRHPNI GDGALLGACV TILGNIKIGA GAMVAAGSLV LKDVPSHSMV
301: AGNPAKLIGF VDEQDPSMTM EHDATREFFQ NVAVAYRETI PNGSSVSGSC RERRH

Arabidopsis Description

SAT4SERAT3 [Source:UniProtKB/TrEMBL;Acc:A0A178USX0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.