CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY39492	Canola	cytosol	100.0	100.0
CDY46062	Canola	cytosol	98.0	98.0
CDX72637	Canola	cytosol	98.0	98.0
CDX82093	Canola	extracellular	18.0	6.67
CDX68235	Canola	extracellular	24.0	5.94
CDY11117	Canola	extracellular	24.0	5.94
CDX96460	Canola	extracellular	24.0	5.94
CDX72969	Canola	extracellular	24.0	5.94
AT1G73260.1	Thale cress	extracellular, vacuole	24.0	5.58
CDY11118	Canola	extracellular	22.0	5.47
CDY69418	Canola	extracellular	22.0	5.37
CDY65093	Canola	extracellular	20.0	5.21
CDX96464	Canola	extracellular	22.0	5.19
CDY65090	Canola	extracellular	18.0	5.08
CDY59713	Canola	cytosol, nucleus, vacuole	20.0	5.08
CDX72972	Canola	extracellular	20.0	4.88
CDY68006	Canola	extracellular, plasma membrane, vacuole	20.0	4.88
CDX96462	Canola	extracellular	20.0	4.78
CDY59714	Canola	extracellular, nucleus, vacuole	20.0	4.31
CDX96465	Canola	extracellular	14.0	4.27
CDX96463	Canola	extracellular, vacuole	14.0	4.07
CDY68690	Canola	extracellular	18.0	3.96
CDY65089	Canola	extracellular	16.0	3.86
CDX96461	Canola	extracellular	16.0	3.83
CDX72971	Canola	extracellular	16.0	3.79
CDX72973	Canola	extracellular	16.0	3.74
CDY65088	Canola	extracellular	12.0	3.59
CDY65087	Canola	cytosol, extracellular, mitochondrion	10.0	3.57
CDY45152	Canola	extracellular, vacuole	14.0	3.55
CDY30911	Canola	extracellular, vacuole	14.0	3.55
CDX72977	Canola	extracellular	12.0	3.3
CDY33655	Canola	extracellular	6.0	3.03
CDX82086	Canola	extracellular	4.0	2.78
CDX82080	Canola	extracellular	4.0	2.47
CDY59712	Canola	extracellular	6.0	2.4
CDY67710	Canola	extracellular	6.0	2.22
CDX82085	Canola	extracellular	2.0	1.82

Protein Annotations

EnsemblPlants:CDY53302	EnsemblPlantsGene:GSBRNA2T00010410001	Gene3D:4.10.1110.10	GO:A0A078ITH0	GO:GO:0003674	GO:GO:0005488
GO:GO:0008270	GO:GO:0046872	InterPro:AN1-like_Znf	InterPro:IPR000058	InterPro:IPR035896	InterPro:Znf_AN1
PANTHER:PTHR10634	PANTHER:PTHR10634:SF38	PFAM:PF01428	PFscan:PS51039	ProteinID:CDY39492.1	ProteinID:CDY53302
ProteinID:CDY53302.1	SUPFAM:SSF118310	UniParc:UPI0004EEFA7E	UniProt:A0A078ITH0	MapMan:35.1	:

Description

BnaC02g46410DBnaA01g24960D protein [Source:UniProtKB/TrEMBL;Acc:A0A078ITH0]

Coordinates

chrLK033185:-:47207..47359

Molecular Weight (calculated)

5742.0 Da

IEP (calculated)

9.144

GRAVY (calculated)

-0.550

Length

50 amino acids

Sequence
(BLAST)

1: MGFKCKCGST FCRSHRCPEK HECSFNFKEV GRDVIAKANH VIKADKVERI

Best Arabidopsis Sequence Match ( AT4G12040.1 )
(BLAST)

001: MGSEENNSTS FPPTEPKLCD NGCGFFGSPS NMNLCSKCYR SLRAEEDQTA VAKAAVKNSL KLPSCSIIAP GQKHPLEIKP AHLETVVVTA EPSSVPVAAE
101: QDEAEPSRPV RPNNRCFSCN KKVGVMGFKC KCGSTFCGSH RYPEKHECSF DFKEVGRDAI AKANPLVKAD KVQRI

Arabidopsis Description

SAP7SAP7 [Source:UniProtKB/TrEMBL;Acc:A0A178V0G6]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.