CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 5
endoplasmic reticulum 7
vacuole 5
plasma membrane 5
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX71540
CDX95451
CDX95457
CDX99227
CDY02431
CDY06760
CDY17044
CDY17093
CDY17193
CDY22370
CDY25228
CDY27951
CDY32970
CDY43592
CDY46179
CDY50154
CDY50157
CDY63586

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G21750.1	CDY06760	AT1G47128.1	18676877
AT1G21750.1	CDY17044	AT1G47128.1	18676877
AT1G21750.1	CDY17093	AT1G47128.1	18676877
AT1G21750.1	CDY17193	AT1G47128.1	18676877
AT1G21750.1	CDY27951	AT1G47128.1	18676877
AT1G21750.1	CDY63586	AT1G47128.1	18676877
AT1G21750.1	CDX95451	AT3G19390.1	18676877
AT1G21750.1	CDX95457	AT3G19390.1	18676877
AT1G21750.1	CDX99227	AT3G19390.1	18676877
AT1G21750.1	CDY46179	AT3G19390.1	18676877
AT1G21750.1	CDY50154	AT3G19390.1	18676877
AT1G21750.1	CDY50157	AT3G19390.1	18676877
AT1G21750.1	CDY32970	AT5G42980.1	15352244
AT1G21750.1	CDY43592	AT5G42980.1	15352244
AT1G21750.1	CDX71540	AT5G43060.1	18676877
AT1G21750.1	CDY02431	AT5G43060.1	18676877
AT1G21750.1	CDY22370	AT5G43060.1	18676877
AT1G21750.1	CDY25228	AT5G43060.1	18676877

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08176	Canola	endoplasmic reticulum	97.59	97.59
CDY38821	Canola	cytosol, endoplasmic reticulum	86.14	85.8
CDY01314	Canola	endoplasmic reticulum	85.14	85.48
CDX96575	Canola	endoplasmic reticulum	85.74	85.23
CDY00400	Canola	endoplasmic reticulum	86.14	85.12
AT1G21750.1	Thale cress	endoplasmic reticulum	83.73	83.23
CDX87514	Canola	endoplasmic reticulum	75.1	73.48
CDX88376	Canola	cytosol, endoplasmic reticulum	75.3	73.39
CDY38344	Canola	endoplasmic reticulum	73.29	71.43
CDY40898	Canola	endoplasmic reticulum	73.09	71.37
PGSC0003DMT400010624	Potato	endoplasmic reticulum	59.04	59.51
CDX79207	Canola	cytosol	13.65	56.2
Solyc05g056400.2.1	Tomato	plastid	58.63	55.2
PGSC0003DMT400060279	Potato	cytosol	19.48	53.3
Solyc06g005940.2.1	Tomato	nucleus, plastid	52.61	52.51
CDY09193	Canola	endoplasmic reticulum	34.94	29.64
CDY31525	Canola	endoplasmic reticulum	35.34	29.53
CDY53631	Canola	endoplasmic reticulum	35.14	29.36
CDX73422	Canola	endoplasmic reticulum	32.13	27.78
CDY56958	Canola	endoplasmic reticulum	31.93	27.46
CDX80106	Canola	endoplasmic reticulum	19.28	26.59
CDY57723	Canola	endoplasmic reticulum	19.28	26.59
CDY53400	Canola	endoplasmic reticulum	17.67	26.04
CDX95726	Canola	endoplasmic reticulum	18.67	25.69
CDX83326	Canola	endoplasmic reticulum	18.67	25.69
CDX73337	Canola	endoplasmic reticulum	21.89	25.06
CDY37102	Canola	endoplasmic reticulum	21.29	24.37
CDY47529	Canola	endoplasmic reticulum	25.1	23.76
CDY02550	Canola	endoplasmic reticulum	25.1	23.76
CDY68572	Canola	endoplasmic reticulum	24.5	23.28
CDX95112	Canola	endoplasmic reticulum	6.63	22.92
CDY52981	Canola	endoplasmic reticulum	24.3	22.87
CDX93606	Canola	endoplasmic reticulum	6.43	22.22
CDY18278	Canola	endoplasmic reticulum	18.07	20.64
CDY12149	Canola	endoplasmic reticulum	18.07	20.32
CDY52544	Canola	endoplasmic reticulum	18.07	20.27
CDX79497	Canola	endoplasmic reticulum	17.67	19.86
CDX95413	Canola	cytosol	9.44	19.67

Protein Annotations

Gene3D:3.40.30.10	MapMan:50.5.3	GO:A0A078EYG5	EnsemblPlants:CDY04673	ProteinID:CDY04673	ProteinID:CDY04673.1
InterPro:Disulphide_isomerase	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0008150	GO:GO:0009987	GO:GO:0016853	GO:GO:0019725
GO:GO:0045454	EnsemblPlantsGene:GSBRNA2T00119275001	InterPro:IPR013766	PFAM:PF00085	PFAM:PF13848	PRINTS:PR00421
ScanProsite:PS00194	PFscan:PS51257	PFscan:PS51352	PANTHER:PTHR18929	PANTHER:PTHR18929:SF186	InterPro:Prot_disulphide_isomerase
SUPFAM:SSF52833	SignalP:SignalP-noTM	TIGRFAMs:TIGR01126	TIGRFAMs:TIGR01130	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_CS
InterPro:Thioredoxin_domain	UniParc:UPI0004EE55F6	SEG:seg	:	:	:

Description

BnaC05g17110D

Coordinates

chrLK031956:+:738505..741347

Molecular Weight (calculated)

55569.5 Da

IEP (calculated)

4.876

GRAVY (calculated)

-0.313

Length

498 amino acids

Sequence
(BLAST)

001: MAMRGYTLCS ILVFSLFASC VRSKETKEFV LTLDHTNFTE TINKHDFIVV EFYAPWCGHC KQLAPEYEKA ASELSSHVSP VVLAKIDASE ETNKEFATKY
101: SVQGFPTIKI LRNGGKAVQE YNGPREADGI VTYLKKQSGP ASFEIKSADA AAEVVGDKNV VAVGVFPKLS GAEFDSFMAT AEKLRSDYDF AHTSDAKLLP
201: RGESVTGPVV RLFKPFDELF VDFRDFVGEA LEKFVKESSI PLITVFDSDP NNHPYVLKFF EIPNTKALFF MNFNGEGAES LKSKYREVAA SNKGHGLSFL
301: LGDAENSQEA LQHYGVEQRQ LPLIILQTVD DKKYLKTNVE VDQIESWIND FKDGKVSPYK KSQPIPSENN EPVKVVVAES LDEMVFNSGK NVLLEFYAPW
401: CGHCQNLVPI LDEVAVSYQS DPSVVIAKFD ATANDFPHDT FDVKGFPTIY LRSANGNIVL YKGDRTKEDI TSFIDKNKDT AGETKTEEKT TKEVKDEL

Best Arabidopsis Sequence Match ( AT1G21750.1 )
(BLAST)

001: MAMRGFTLFS ILVLSLCASS IRSEETETKE FVLTLDHTNF TDTINKHDFI VVEFYAPWCG HCKQLAPEYE KAASALSSNV PPVVLAKIDA SEETNREFAT
101: QYEVQGFPTI KIFRNGGKAV QEYNGPREAE GIVTYLKKQS GPASAEIKSA DDASEVVSDK KVVVVGIFPK LSGSEFDSFM AIAEKLRSEL DFAHTSDAKL
201: LPRGESSVTG PVVRLFKPFD EQFVDSKDFD GEALEKFVKE SSIPLITVFD KDPNNHPYVI KFFESTNTKA MLFINFTGEG AESLKSKYRE VATSNKGQGL
301: SFLLGDAENS QGAFQYFGLE ESQVPLIIIQ TADDKKYLKT NVEVDQIESW VKDFKDGKIA PHKKSQPIPA ENNEPVKVVV SDSLDDIVLN SGKNVLLEFY
401: APWCGHCQKL APILDEVAVS YQSDSSVVIA KLDATANDFP KDTFDVKGFP TIYFKSASGN VVVYEGDRTK EDFISFVDKN KDTVGEPKKE EETTEEVKDE
501: L

Arabidopsis Description

PDIL1-1Protein disulfide isomerase-like 1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9XI01]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.