CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytosol

Predictor Summary:

extracellular 5
endoplasmic reticulum 8
vacuole 5
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	endoplasmic reticulum

cytosol: 16847873

msms PMID: 16847873 doi

V Katavic, GK Agrawal, M Hajduch, SL Harris, JJ Thelen

University of Missouri-Columbia, Department of Biochemistry, Columbia 65211, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra015665.1-P	Field mustard	endoplasmic reticulum	97.65	98.04
CDX87514	Canola	endoplasmic reticulum	97.46	97.84
AT1G77510.1	Thale cress	endoplasmic reticulum	84.74	85.24
CDY38344	Canola	endoplasmic reticulum	83.56	83.56
CDY40898	Canola	endoplasmic reticulum	83.37	83.53
CDY00400	Canola	endoplasmic reticulum	77.89	78.97
CDY01314	Canola	endoplasmic reticulum	75.73	78.02
CDY38821	Canola	cytosol, endoplasmic reticulum	76.32	78.0
CDX96575	Canola	endoplasmic reticulum	75.73	77.25
CDY04673	Canola	endoplasmic reticulum	73.39	75.3
CDY08176	Canola	endoplasmic reticulum	72.8	74.7
CDX79207	Canola	cytosol	14.29	60.33
PGSC0003DMT400010624	Potato	endoplasmic reticulum	57.34	59.31
Solyc05g056400.2.1	Tomato	plastid	57.14	55.2
PGSC0003DMT400060279	Potato	cytosol	19.57	54.95
Solyc06g005940.2.1	Tomato	nucleus, plastid	52.05	53.31
CDY09193	Canola	endoplasmic reticulum	33.07	28.79
CDY31525	Canola	endoplasmic reticulum	33.27	28.52
CDY53631	Canola	endoplasmic reticulum	33.27	28.52
CDY53400	Canola	endoplasmic reticulum	18.2	27.51
CDX73422	Canola	endoplasmic reticulum	29.75	26.39
CDX80106	Canola	endoplasmic reticulum	18.59	26.32
CDY57723	Canola	endoplasmic reticulum	18.59	26.32
CDY56958	Canola	endoplasmic reticulum	29.55	26.08
CDX95726	Canola	endoplasmic reticulum	18.4	25.97
CDX83326	Canola	endoplasmic reticulum	18.4	25.97
CDX73337	Canola	endoplasmic reticulum	20.94	24.6
CDY37102	Canola	endoplasmic reticulum	20.94	24.6
CDX95112	Canola	endoplasmic reticulum	6.85	24.31
CDX93606	Canola	endoplasmic reticulum	6.65	23.61
CDY47529	Canola	endoplasmic reticulum	24.27	23.57
CDY02550	Canola	endoplasmic reticulum	24.27	23.57
CDY68572	Canola	endoplasmic reticulum	24.07	23.47
CDY52981	Canola	endoplasmic reticulum	23.48	22.68
CDY18278	Canola	endoplasmic reticulum	18.59	21.79
CDY12149	Canola	endoplasmic reticulum	18.0	20.77
CDX79497	Canola	endoplasmic reticulum	18.0	20.77
CDY52544	Canola	endoplasmic reticulum	18.0	20.72
CDX95413	Canola	cytosol	9.0	19.25

Protein Annotations

Gene3D:3.40.30.10	MapMan:50.5.3	GO:A0A078DGH9	EnsemblPlants:CDX88376	ProteinID:CDX88376	ProteinID:CDX88376.1
InterPro:Disulphide_isomerase	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0008150	GO:GO:0009987	GO:GO:0016853	GO:GO:0019725
GO:GO:0045454	EnsemblPlantsGene:GSBRNA2T00147900001	InterPro:IPR013766	PFAM:PF00085	PFAM:PF13848	PRINTS:PR00421
ScanProsite:PS00194	PFscan:PS51352	PANTHER:PTHR18929	PANTHER:PTHR18929:SF186	InterPro:Prot_disulphide_isomerase	SUPFAM:SSF52833
SignalP:SignalP-noTM	TIGRFAMs:TIGR01126	TIGRFAMs:TIGR01130	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_CS	InterPro:Thioredoxin_domain
UniParc:UPI0004EDE512	:	:	:	:	:

Description

BnaC06g38200D

Coordinates

chrLK031855:+:629562..632409

Molecular Weight (calculated)

55927.9 Da

IEP (calculated)

4.749

GRAVY (calculated)

-0.236

Length

511 amino acids

Sequence
(BLAST)

001: MASNGFAMLP ILVLALFASS IRSEETETKE FVLTLDHSNF TDTINKHDFI VVEFYAPWCG HCKSLAPEYE KAAAELSSQS PPIFLAKIDA SEESNKGIAN
101: EYKIQGFPTI KILRKGGKSV QDYNGPREAA GIVTYVKKQS GPASAEIKSA DGAAEVIGEK SVVAVGVFPK LSGEEFDSFM AVAEKLRADY DFAHTLDAKL
201: LPRGDSSVAG PVVRLFKPFD ELFVDSKDFN GEALEKFVKE SSIPLVTVFD KDPSNHPYVS KFFDSPATKV MMFVNFTGET AESLKSKFRE VATSSKGQDL
301: AFLVGDAESS QGALQYFGLE ESQVPLIIIQ TSDSKKYLKA NVVVDQIESW MKDFKDGKVA AHKKSQPIPA ENNEPVKVVV AESLDDMVFN SGKNVLIEFY
401: APWCGHCQKL APILDEVALA FQNDPSVIVA KLDATANDIP SDTFDVKGFP TIYFRSADGK VVVYEGSRTK EDFISFIEKN KPASHGEESS TSTTIRSGEH
501: KTEESAAKDE L

Best Arabidopsis Sequence Match ( AT1G77510.1 )
(BLAST)

001: MAFKGFACFS ILLLLSLFVS SIRSEETKEF VLTLDHSNFT ETISKHDFIV VEFYAPWCGH CQKLAPEYEK AASELSSHNP PLALAKIDAS EEANKEFANE
101: YKIQGFPTLK ILRNGGKSVQ DYNGPREAEG IVTYLKKQSG PASVEIKSAD SATEVVGEKN VVAVGVFPKL SGDEFDSFMA LAEKLRADYD FAHTLDAKFL
201: PRGESVEGPA VRLFKPFDEL FVDSKDFNGE ALEKFVKESS IPLVTVFDSD PNNHPYVAKF FESPATKAMM FVNFTGATAE ALKSKYREVA TSNKDQSLAF
301: LVGDAESSQG AFQYFGLEES QVPLIIIQTP DNKKYLKVNV EVDQIESWFK DFQDGKVAVH KKSQPIPAEN NEPVKVVVAE SLDDIVFKSG KNVLIEFYAP
401: WCGHCQKLAP ILDEVALSFQ NDPSVIIAKL DATANDIPSD TFDVKGFPTI YFRSASGNVV VYEGDRTKED FINFVEKNSE KKPTSHGEES TKSEEPKKTE
501: ETAAKDEL

Arabidopsis Description

PDIL1-2Protein disulfide isomerase-like 1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRG3]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.