Factsheet for PGSC0003DMT400060279

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
endoplasmic reticulum 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400020654

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G21750.1	PGSC0003DMT400020654	AT1G47128.1	18676877
AT1G21750.1	PGSC0003DMT400020654	AT5G43060.1	18676877

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g056400.2.1	Tomato	plastid	97.8	33.65
PGSC0003DMT400010624	Potato	endoplasmic reticulum	69.23	25.51
PGSC0003DMT400045299	Potato	endoplasmic reticulum	62.09	22.74
GSMUA_Achr1P16970_001	Banana	endoplasmic reticulum	59.34	21.3
AT1G21750.1	Thale cress	endoplasmic reticulum	58.24	21.16
PGSC0003DMT400036388	Potato	endoplasmic reticulum	56.59	21.06
CDY00400	Canola	endoplasmic reticulum	56.59	20.44
Bra012293.1-P	Field mustard	endoplasmic reticulum	55.49	20.36
CDY01314	Canola	endoplasmic reticulum	55.49	20.36
CDY38821	Canola	cytosol, endoplasmic reticulum	55.49	20.2
Bra016405.1-P	Field mustard	endoplasmic reticulum	55.49	20.16
CDX96575	Canola	endoplasmic reticulum	55.49	20.16
AT1G77510.1	Thale cress	endoplasmic reticulum	56.04	20.08
Bra017948.1-P	Field mustard	endoplasmic reticulum	53.85	19.68
CDX87514	Canola	endoplasmic reticulum	54.95	19.65
CDY40898	Canola	endoplasmic reticulum	54.95	19.61
CDY38344	Canola	endoplasmic reticulum	54.95	19.57
CDX88376	Canola	cytosol, endoplasmic reticulum	54.95	19.57
Bra008311.1-P	Field mustard	endoplasmic reticulum	54.95	19.57
CDY04673	Canola	endoplasmic reticulum	53.3	19.48
CDY08176	Canola	endoplasmic reticulum	53.3	19.48
Bra015665.1-P	Field mustard	endoplasmic reticulum	54.4	19.45
GSMUA_Achr3P22070_001	Banana	endoplasmic reticulum	54.4	19.26
Os11t0199200-01	Rice	extracellular, plasma membrane	52.2	18.55
TraesCS4D01G098400.1	Wheat	golgi	51.1	18.06
TraesCS4A01G214200.2	Wheat	plastid	51.1	18.06
TraesCS2A01G306500.1	Wheat	endoplasmic reticulum	50.55	17.8
TraesCS4B01G101800.3	Wheat	golgi	50.0	17.77
TraesCS2B01G323200.1	Wheat	endoplasmic reticulum	50.55	17.76
KXG26345	Sorghum	endoplasmic reticulum	50.0	17.57
TraesCS2D01G305000.1	Wheat	endoplasmic reticulum	49.45	17.41
KXG28001	Sorghum	endoplasmic reticulum	47.8	16.89
HORVU4Hr1G043910.1	Barley	extracellular	51.1	16.61
Os02t0554900-01	Rice	plastid	48.9	16.33
Zm00001d007301_P001	Maize	endoplasmic reticulum	48.9	16.21
PGSC0003DMT400007185	Potato	endoplasmic reticulum	25.82	13.09
Zm00001d049099_P005	Maize	endoplasmic reticulum	37.91	12.97
PGSC0003DMT400020867	Potato	endoplasmic reticulum	35.71	11.23
PGSC0003DMT400033517	Potato	endoplasmic reticulum, mitochondrion	34.62	11.19
PGSC0003DMT400001769	Potato	extracellular	23.08	9.72
PGSC0003DMT400008689	Potato	endoplasmic reticulum	28.57	9.4
PGSC0003DMT400006756	Potato	endoplasmic reticulum	23.08	7.81
Zm00001d028108_P001	Maize	mitochondrion	2.75	3.57
PGSC0003DMT400067074	Potato	endoplasmic reticulum	9.34	3.49
PGSC0003DMT400070983	Potato	endoplasmic reticulum	7.14	3.0
Zm00001d041417_P001	Maize	endoplasmic reticulum	3.3	2.71
Zm00001d016017_P002	Maize	cytosol	3.3	2.35
Zm00001d035557_P001	Maize	mitochondrion	2.2	1.17
HORVU4Hr1G049820.1	Barley	cytosol	1.1	1.1
PGSC0003DMT400050665	Potato	endoplasmic reticulum	1.1	0.99
Os04t0436300-01	Rice	endoplasmic reticulum	1.1	0.68
HORVU4Hr1G049880.2	Barley	mitochondrion, plastid	1.1	0.68
HORVU2Hr1G076360.1	Barley	endoplasmic reticulum	0.55	0.19

Protein Annotations

Gene3D:3.40.30.10	MapMan:35.1	InterPro:Disulphide_isomerase	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005623	GO:GO:0008150	GO:GO:0009987	GO:GO:0016853	GO:GO:0019725	GO:GO:0045454
InterPro:IPR013766	UniProt:M1C5I7	PFAM:PF00085	EnsemblPlantsGene:PGSC0003DMG401023448	PGSC:PGSC0003DMG401023448	EnsemblPlants:PGSC0003DMT400060279
PRINTS:PR00421	ScanProsite:PS00194	PFscan:PS51352	PANTHER:PTHR18929	PANTHER:PTHR18929:SF186	SUPFAM:SSF52833
TIGRFAMs:TIGR01126	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_CS	InterPro:Thioredoxin_domain	UniParc:UPI000294A9BF	SEG:seg

Description

Protein disulfide isomerase [Source:PGSC_GENE;Acc:PGSC0003DMG401023448]

Coordinates

chr5:+:51861550..51863797

Molecular Weight (calculated)

20278.9 Da

IEP (calculated)

4.661

GRAVY (calculated)

-0.476

Length

182 amino acids

Sequence
(BLAST)

001: MVNEGEKYIS THVQPDVLAS WLKDYKDGKL KQFFKSEPIP EVNNEPVKVV VRDTLRDLVL NSGKNVLLEL YAPWCGHCKA LAPILDEVAL SFEKDSDVLI
101: AKLDATANDI PKGEFDIKGF PTLYFKSASG NISQYEGDRT KEAIIEFIEK NRDKTAAHDS ESVKADSTKP ESVTTDSAKD EL

Best Arabidopsis Sequence Match ( AT1G21750.1 )
(BLAST)

001: MAMRGFTLFS ILVLSLCASS IRSEETETKE FVLTLDHTNF TDTINKHDFI VVEFYAPWCG HCKQLAPEYE KAASALSSNV PPVVLAKIDA SEETNREFAT
101: QYEVQGFPTI KIFRNGGKAV QEYNGPREAE GIVTYLKKQS GPASAEIKSA DDASEVVSDK KVVVVGIFPK LSGSEFDSFM AIAEKLRSEL DFAHTSDAKL
201: LPRGESSVTG PVVRLFKPFD EQFVDSKDFD GEALEKFVKE SSIPLITVFD KDPNNHPYVI KFFESTNTKA MLFINFTGEG AESLKSKYRE VATSNKGQGL
301: SFLLGDAENS QGAFQYFGLE ESQVPLIIIQ TADDKKYLKT NVEVDQIESW VKDFKDGKIA PHKKSQPIPA ENNEPVKVVV SDSLDDIVLN SGKNVLLEFY
401: APWCGHCQKL APILDEVAVS YQSDSSVVIA KLDATANDFP KDTFDVKGFP TIYFKSASGN VVVYEGDRTK EDFISFVDKN KDTVGEPKKE EETTEEVKDE
501: L

Arabidopsis Description

PDIL1-1Protein disulfide isomerase-like 1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9XI01]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.