Factsheet for PGSC0003DMT400010624

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 6
endoplasmic reticulum 9
vacuole 5
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	endoplasmic reticulum
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	endoplasmic reticulum

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400020654

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G21750.1	PGSC0003DMT400020654	AT1G47128.1	18676877
AT1G21750.1	PGSC0003DMT400020654	AT5G43060.1	18676877

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g005940.2.1	Tomato	nucleus, plastid	84.41	83.57
PGSC0003DMT400060279	Potato	cytosol	25.51	69.23
PGSC0003DMT400045299	Potato	endoplasmic reticulum	62.96	62.58
AT1G21750.1	Thale cress	endoplasmic reticulum	62.96	62.08
CDY38821	Canola	cytosol, endoplasmic reticulum	62.75	62.0
Bra016405.1-P	Field mustard	endoplasmic reticulum	62.75	61.88
CDX96575	Canola	endoplasmic reticulum	62.75	61.88
GSMUA_Achr1P16970_001	Banana	endoplasmic reticulum	62.96	61.34
CDY01314	Canola	endoplasmic reticulum	60.73	60.48
CDY00400	Canola	endoplasmic reticulum	61.54	60.32
Bra012293.1-P	Field mustard	endoplasmic reticulum	60.53	60.28
CDY04673	Canola	endoplasmic reticulum	59.51	59.04
Bra017948.1-P	Field mustard	endoplasmic reticulum	59.31	58.84
CDY08176	Canola	endoplasmic reticulum	59.31	58.84
AT1G77510.1	Thale cress	endoplasmic reticulum	60.32	58.66
Os11t0199200-01	Rice	extracellular, plasma membrane	60.32	58.2
CDX87514	Canola	endoplasmic reticulum	59.31	57.56
Bra015665.1-P	Field mustard	endoplasmic reticulum	59.11	57.37
CDX88376	Canola	cytosol, endoplasmic reticulum	59.31	57.34
CDY40898	Canola	endoplasmic reticulum	58.5	56.67
CDY38344	Canola	endoplasmic reticulum	58.3	56.36
Bra008311.1-P	Field mustard	endoplasmic reticulum	58.3	56.36
PGSC0003DMT400036388	Potato	endoplasmic reticulum	55.47	56.03
GSMUA_Achr3P22070_001	Banana	endoplasmic reticulum	58.3	56.03
TraesCS4A01G214200.2	Wheat	plastid	57.89	55.53
TraesCS4B01G101800.3	Wheat	golgi	57.49	55.47
TraesCS4D01G098400.1	Wheat	golgi	57.49	55.15
KXG28001	Sorghum	endoplasmic reticulum	55.87	53.59
Zm00001d028108_P001	Maize	mitochondrion	14.98	52.86
HORVU4Hr1G049820.1	Barley	cytosol	19.23	52.2
KXG26345	Sorghum	endoplasmic reticulum	53.44	50.97
HORVU4Hr1G043910.1	Barley	extracellular	57.69	50.89
Zm00001d007301_P001	Maize	endoplasmic reticulum	56.28	50.64
Zm00001d049099_P005	Maize	endoplasmic reticulum	54.25	50.38
TraesCS2A01G306500.1	Wheat	endoplasmic reticulum	51.82	49.52
TraesCS2D01G305000.1	Wheat	endoplasmic reticulum	51.62	49.32
TraesCS2B01G323200.1	Wheat	endoplasmic reticulum	51.42	49.03
Os02t0554900-01	Rice	plastid	53.04	48.07
Os04t0436300-01	Rice	endoplasmic reticulum	27.94	47.1
HORVU4Hr1G049880.2	Barley	mitochondrion, plastid	24.49	41.3
Zm00001d016017_P002	Maize	cytosol	20.45	39.61
Zm00001d041417_P001	Maize	endoplasmic reticulum	16.19	36.2
Zm00001d035557_P001	Maize	mitochondrion	24.49	35.28
PGSC0003DMT400033517	Potato	endoplasmic reticulum, mitochondrion	30.97	27.18
PGSC0003DMT400020867	Potato	endoplasmic reticulum	31.58	26.94
HORVU2Hr1G076360.1	Barley	endoplasmic reticulum	27.73	26.35
PGSC0003DMT400007185	Potato	endoplasmic reticulum	18.42	25.35
PGSC0003DMT400008689	Potato	endoplasmic reticulum	28.34	25.32
PGSC0003DMT400001769	Potato	extracellular	18.62	21.3
PGSC0003DMT400070983	Potato	endoplasmic reticulum	18.62	21.2
PGSC0003DMT400006756	Potato	endoplasmic reticulum	22.67	20.82
PGSC0003DMT400067074	Potato	endoplasmic reticulum	18.83	19.1
PGSC0003DMT400050665	Potato	endoplasmic reticulum	5.06	12.38

Protein Annotations

Gene3D:3.40.30.10	MapMan:50.5.3	InterPro:Disulphide_isomerase	GO:GO:0003674	GO:GO:0003756	GO:GO:0003824
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0008150
GO:GO:0009987	GO:GO:0016853	GO:GO:0019725	GO:GO:0045454	InterPro:IPR013766	UniProt:M0ZYC1
PFAM:PF00085	PFAM:PF13848	EnsemblPlantsGene:PGSC0003DMG400004150	PGSC:PGSC0003DMG400004150	EnsemblPlants:PGSC0003DMT400010624	PRINTS:PR00421
ScanProsite:PS00194	PFscan:PS51352	PANTHER:PTHR18929	PANTHER:PTHR18929:SF186	InterPro:Prot_disulphide_isomerase	SUPFAM:SSF52833
SignalP:SignalP-noTM	TIGRFAMs:TIGR01126	TIGRFAMs:TIGR01130	TMHMM:TMhelix	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_CS
InterPro:Thioredoxin_domain	UniParc:UPI000294F7F7	SEG:seg	:	:	:

Description

Protein disulfide isomerase [Source:PGSC_GENE;Acc:PGSC0003DMG400004150]

Coordinates

chr6:-:3520861..3525995

Molecular Weight (calculated)

54899.8 Da

IEP (calculated)

4.554

GRAVY (calculated)

-0.287

Length

494 amino acids

Sequence
(BLAST)

001: MAKSGILVIV SALVVLAVCG VFAEEKEYVL TLDHTNLTET VAKHNFIVLE FYAPWCGHCK NLAPEYEKAA SELSSHDPPI VLAKYDASDE ANRELSKQYE
101: IQGFPTIKIL RDGGKKVQEY NGPREAAGIV SYLKKQVGPA SAEIKSKEDA TNLIDEKSIF VVGIFPDPSG EKFENYLTLA EKLRGEVDFA HTVDAKHLPR
201: GGPVNKPTLR LLKPFDELFV DFEDFEVDAM EKFISESSIP IVTIFDNDPN NHPYVNKFFE GTNAKALLFV NFSSDFDAFK SKYNDVAVLY KGDGVSFLLG
301: DVEAGQGAFE YFGLKPEQAP VIIIMDTEEQ KYVKDHVEPD AIAAYLKDYK DGKLKPHVKS QPIPEVNDEP VKVVVRDTLQ DMVYNSGKNV LLEFYAPWCG
401: HCKSLAPILD EVAVSFESNA DVLIAKLDAT ANDLPKGDFD VQGFPTMYFR SASGNLSQYN GERTKEAIIE FIENNRDKPA QSDSAKVDSA KDEL

Best Arabidopsis Sequence Match ( AT1G21750.1 )
(BLAST)

001: MAMRGFTLFS ILVLSLCASS IRSEETETKE FVLTLDHTNF TDTINKHDFI VVEFYAPWCG HCKQLAPEYE KAASALSSNV PPVVLAKIDA SEETNREFAT
101: QYEVQGFPTI KIFRNGGKAV QEYNGPREAE GIVTYLKKQS GPASAEIKSA DDASEVVSDK KVVVVGIFPK LSGSEFDSFM AIAEKLRSEL DFAHTSDAKL
201: LPRGESSVTG PVVRLFKPFD EQFVDSKDFD GEALEKFVKE SSIPLITVFD KDPNNHPYVI KFFESTNTKA MLFINFTGEG AESLKSKYRE VATSNKGQGL
301: SFLLGDAENS QGAFQYFGLE ESQVPLIIIQ TADDKKYLKT NVEVDQIESW VKDFKDGKIA PHKKSQPIPA ENNEPVKVVV SDSLDDIVLN SGKNVLLEFY
401: APWCGHCQKL APILDEVAVS YQSDSSVVIA KLDATANDFP KDTFDVKGFP TIYFKSASGN VVVYEGDRTK EDFISFVDKN KDTVGEPKKE EETTEEVKDE
501: L

Arabidopsis Description

PDIL1-1Protein disulfide isomerase-like 1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9XI01]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.