CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytosol

Predictor Summary:

extracellular 5
endoplasmic reticulum 8
vacuole 5
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	endoplasmic reticulum

cytosol: 16847873

msms PMID: 16847873 doi

V Katavic, GK Agrawal, M Hajduch, SL Harris, JJ Thelen

University of Missouri-Columbia, Department of Biochemistry, Columbia 65211, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX71540
CDX95451
CDX95457
CDX99227
CDY02431
CDY06760
CDY17044
CDY17093
CDY17193
CDY22370
CDY25228
CDY27951
CDY32970
CDY43592
CDY46179
CDY50154
CDY50157
CDY63586

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G21750.1	CDY06760	AT1G47128.1	18676877
AT1G21750.1	CDY17044	AT1G47128.1	18676877
AT1G21750.1	CDY17093	AT1G47128.1	18676877
AT1G21750.1	CDY17193	AT1G47128.1	18676877
AT1G21750.1	CDY27951	AT1G47128.1	18676877
AT1G21750.1	CDY63586	AT1G47128.1	18676877
AT1G21750.1	CDX95451	AT3G19390.1	18676877
AT1G21750.1	CDX95457	AT3G19390.1	18676877
AT1G21750.1	CDX99227	AT3G19390.1	18676877
AT1G21750.1	CDY46179	AT3G19390.1	18676877
AT1G21750.1	CDY50154	AT3G19390.1	18676877
AT1G21750.1	CDY50157	AT3G19390.1	18676877
AT1G21750.1	CDY32970	AT5G42980.1	15352244
AT1G21750.1	CDY43592	AT5G42980.1	15352244
AT1G21750.1	CDX71540	AT5G43060.1	18676877
AT1G21750.1	CDY02431	AT5G43060.1	18676877
AT1G21750.1	CDY22370	AT5G43060.1	18676877
AT1G21750.1	CDY25228	AT5G43060.1	18676877

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96575	Canola	endoplasmic reticulum	98.4	98.2
CDY01314	Canola	endoplasmic reticulum	89.8	90.52
CDY00400	Canola	endoplasmic reticulum	91.0	90.28
AT1G21750.1	Thale cress	endoplasmic reticulum	90.4	90.22
CDY04673	Canola	endoplasmic reticulum	85.8	86.14
CDY08176	Canola	endoplasmic reticulum	84.4	84.74
CDX87514	Canola	endoplasmic reticulum	78.2	76.82
CDX88376	Canola	cytosol, endoplasmic reticulum	78.0	76.32
CDY40898	Canola	endoplasmic reticulum	74.8	73.33
CDY38344	Canola	endoplasmic reticulum	74.8	73.19
PGSC0003DMT400010624	Potato	endoplasmic reticulum	62.0	62.75
Solyc05g056400.2.1	Tomato	plastid	61.0	57.66
Solyc06g005940.2.1	Tomato	nucleus, plastid	56.0	56.11
PGSC0003DMT400060279	Potato	cytosol	20.2	55.49
CDX79207	Canola	cytosol	13.4	55.37
CDY09193	Canola	endoplasmic reticulum	36.4	31.01
CDY31525	Canola	endoplasmic reticulum	36.2	30.37
CDY53631	Canola	endoplasmic reticulum	36.0	30.2
CDX73422	Canola	endoplasmic reticulum	32.4	28.12
CDY56958	Canola	endoplasmic reticulum	32.2	27.81
CDX80106	Canola	endoplasmic reticulum	19.4	26.87
CDY57723	Canola	endoplasmic reticulum	19.4	26.87
CDY53400	Canola	endoplasmic reticulum	18.0	26.63
CDX95726	Canola	endoplasmic reticulum	18.8	25.97
CDX83326	Canola	endoplasmic reticulum	18.6	25.69
CDY02550	Canola	endoplasmic reticulum	27.0	25.67
CDX95112	Canola	endoplasmic reticulum	7.2	25.0
CDY68572	Canola	endoplasmic reticulum	26.2	25.0
CDY47529	Canola	endoplasmic reticulum	26.2	24.9
CDY52981	Canola	endoplasmic reticulum	26.2	24.76
CDX73337	Canola	endoplasmic reticulum	21.2	24.37
CDX93606	Canola	endoplasmic reticulum	7.0	24.31
CDY37102	Canola	endoplasmic reticulum	21.0	24.14
CDY18278	Canola	endoplasmic reticulum	18.8	21.56
CDY12149	Canola	endoplasmic reticulum	19.0	21.44
CDY52544	Canola	endoplasmic reticulum	19.0	21.4
CDX79497	Canola	endoplasmic reticulum	18.4	20.77
CDX95413	Canola	cytosol	9.6	20.08

Protein Annotations

Gene3D:3.40.30.10	MapMan:50.5.3	GO:A0A078HMI0	UniProt:A0A078HMI0	EnsemblPlants:CDY38821	ProteinID:CDY38821
ProteinID:CDY38821.1	InterPro:Disulphide_isomerase	GO:GO:0003674	GO:GO:0003756	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0008150	GO:GO:0009987
GO:GO:0016853	GO:GO:0019725	GO:GO:0045454	EnsemblPlantsGene:GSBRNA2T00066638001	InterPro:IPR013766	PFAM:PF00085
PFAM:PF13848	PRINTS:PR00421	ScanProsite:PS00194	PFscan:PS51352	PANTHER:PTHR18929	PANTHER:PTHR18929:SF186
InterPro:Prot_disulphide_isomerase	SUPFAM:SSF52833	SignalP:SignalP-noTM	TIGRFAMs:TIGR01126	TIGRFAMs:TIGR01130	InterPro:Thioredoxin-like_sf
InterPro:Thioredoxin_CS	InterPro:Thioredoxin_domain	UniParc:UPI0004EF1666	SEG:seg	:	:

Description

BnaC08g19950DProtein disulfide-isomerase [Source:UniProtKB/TrEMBL;Acc:A0A078HMI0]

Coordinates

chrLK032433:+:149568..152492

Molecular Weight (calculated)

55728.5 Da

IEP (calculated)

4.559

GRAVY (calculated)

-0.332

Length

500 amino acids

Sequence
(BLAST)

001: MAMRGYALLS ILALSLFASS VRSEETATET KEFVLTLDHT NFTDTINKHD FIVVEFYAPW CGHCKQLAPE YEKAASELSS HVPPVVLAKI DASEETNREF
101: ATQYEVQGFP TIKIFRNGGK AVQEYNGPRE ADGIVTYLKK QSGPASFEIK SAEDASEFDK KVIVVGVFPK LSGSEFDSFL ATAEKLRSDY DFAHTSDAKL
201: LPRGEAVTGP VVRLFKPFDE LFVDSKDFDG EALEKFVKES SIPLITVFDK DPNNHPYVIK FFDSSNTKAM LFINFTGEGA ESLKSKYREV ATSYKGQGLS
301: FLLGDAENSQ GAFQYFGLEE SQVPLIIIQT ADDKKYLKTN IEIDQIESWV KDFKDGKVAP HKKSQPIPTE NNEPVKVVVA ESLDEMVFNS GKNVLLEFYA
401: PWCGHCQKLV PILDEVAVSY QSDPSVVIAK LDATTNDFPN DTFDVKGFPT IYFRSASGNI VLYDGDRTKE DIISFIDKNK DTAGEPKKEE TTTEAVKDEL

Best Arabidopsis Sequence Match ( AT1G21750.1 )
(BLAST)

001: MAMRGFTLFS ILVLSLCASS IRSEETETKE FVLTLDHTNF TDTINKHDFI VVEFYAPWCG HCKQLAPEYE KAASALSSNV PPVVLAKIDA SEETNREFAT
101: QYEVQGFPTI KIFRNGGKAV QEYNGPREAE GIVTYLKKQS GPASAEIKSA DDASEVVSDK KVVVVGIFPK LSGSEFDSFM AIAEKLRSEL DFAHTSDAKL
201: LPRGESSVTG PVVRLFKPFD EQFVDSKDFD GEALEKFVKE SSIPLITVFD KDPNNHPYVI KFFESTNTKA MLFINFTGEG AESLKSKYRE VATSNKGQGL
301: SFLLGDAENS QGAFQYFGLE ESQVPLIIIQ TADDKKYLKT NVEVDQIESW VKDFKDGKIA PHKKSQPIPA ENNEPVKVVV SDSLDDIVLN SGKNVLLEFY
401: APWCGHCQKL APILDEVAVS YQSDSSVVIA KLDATANDFP KDTFDVKGFP TIYFKSASGN VVVYEGDRTK EDFISFVDKN KDTVGEPKKE EETTEEVKDE
501: L

Arabidopsis Description

PDIL1-1Protein disulfide isomerase-like 1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9XI01]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.