Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 7
- vacuole 6
- plasma membrane 5
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY46179 | Canola | endoplasmic reticulum | 86.19 | 97.11 |
| CDX95457 | Canola | endoplasmic reticulum, extracellular, vacuole | 78.5 | 88.64 |
| CDY50157 | Canola | endoplasmic reticulum, extracellular, vacuole | 78.5 | 88.64 |
| AT3G19390.1 | Thale cress | endoplasmic reticulum | 73.18 | 82.08 |
| CDY50154 | Canola | endoplasmic reticulum | 68.24 | 78.64 |
| CDX95451 | Canola | endoplasmic reticulum, extracellular, vacuole | 67.65 | 77.95 |
| CDX71540 | Canola | extracellular | 54.44 | 60.0 |
| CDY22370 | Canola | extracellular | 54.44 | 60.0 |
| CDY25228 | Canola | extracellular | 53.85 | 59.35 |
| CDY63586 | Canola | endoplasmic reticulum | 52.86 | 58.39 |
| CDY17044 | Canola | endoplasmic reticulum | 52.86 | 58.39 |
| CDY06760 | Canola | endoplasmic reticulum | 52.47 | 58.21 |
| CDY17093 | Canola | endoplasmic reticulum | 52.47 | 58.21 |
| CDY39574 | Canola | cytosol, endoplasmic reticulum, nucleus | 33.14 | 57.14 |
| TraesCS2D01G547600.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 40.83 | 56.25 |
| CDY17193 | Canola | endoplasmic reticulum | 34.71 | 55.35 |
| TraesCS7D01G265100.1 | Wheat | cytosol, nucleus, plastid | 27.61 | 54.26 |
| TraesCS2A01G545700.1 | Wheat | unclear | 49.9 | 53.6 |
| Zm00001d001900_P002 | Maize | endoplasmic reticulum, extracellular, plasma membrane | 49.11 | 53.55 |
| TraesCS2B01G576300.1 | Wheat | unclear | 49.31 | 53.3 |
| Zm00001d026577_P001 | Maize | extracellular, golgi, plasma membrane | 49.31 | 53.19 |
| TraesCS2D01G546600.1 | Wheat | plasma membrane, vacuole | 49.7 | 53.05 |
| CDX69285 | Canola | endoplasmic reticulum, vacuole | 39.05 | 52.94 |
| CDX75633 | Canola | vacuole | 39.05 | 52.94 |
| EES13064 | Sorghum | extracellular, plasma membrane, vacuole | 48.72 | 52.89 |
| CDY22445 | Canola | vacuole | 38.46 | 52.14 |
| CDY48168 | Canola | endoplasmic reticulum | 36.29 | 51.25 |
| CDY44047 | Canola | vacuole | 38.66 | 51.04 |
| TraesCS7B01G162200.1 | Wheat | endoplasmic reticulum | 46.15 | 50.76 |
| CDY01351 | Canola | endoplasmic reticulum | 35.11 | 50.71 |
| CDY31861 | Canola | endoplasmic reticulum | 35.31 | 50.71 |
| HORVU7Hr1G055310.1 | Barley | extracellular | 46.35 | 50.32 |
| TraesCS2B01G577300.1 | Wheat | extracellular, golgi | 46.55 | 50.32 |
| CDX75496 | Canola | endoplasmic reticulum | 35.31 | 50.28 |
| Os04t0670200-02 | Rice | extracellular | 48.72 | 50.2 |
| TraesCS7A01G264200.1 | Wheat | endoplasmic reticulum | 46.55 | 49.79 |
| TraesCS5D01G149800.1 | Wheat | endoplasmic reticulum | 45.96 | 49.79 |
| EES11628 | Sorghum | extracellular | 46.15 | 49.68 |
| TraesCS2D01G547800.1 | Wheat | endoplasmic reticulum, extracellular | 45.36 | 49.15 |
| TraesCS2A01G546700.1 | Wheat | endoplasmic reticulum | 45.36 | 49.15 |
| TraesCS2A01G546300.1 | Wheat | endoplasmic reticulum, vacuole | 45.36 | 49.04 |
| TraesCS2B01G577500.1 | Wheat | endoplasmic reticulum | 45.17 | 48.93 |
| CDX96617 | Canola | endoplasmic reticulum | 31.56 | 48.93 |
| CDY27951 | Canola | endoplasmic reticulum | 44.18 | 48.8 |
| CDY58055 | Canola | golgi, nucleus, plastid | 30.97 | 48.76 |
| CDY33651 | Canola | endoplasmic reticulum | 31.16 | 48.47 |
| HORVU2Hr1G121440.2 | Barley | endoplasmic reticulum | 47.73 | 48.4 |
| Os04t0670500-01 | Rice | extracellular | 46.75 | 48.37 |
| CDY34045 | Canola | endoplasmic reticulum | 34.32 | 48.2 |
| CDX83168 | Canola | endoplasmic reticulum | 34.12 | 47.92 |
| HORVU2Hr1G121150.1 | Barley | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 45.36 | 47.33 |
| CDY50483 | Canola | endoplasmic reticulum | 32.15 | 47.11 |
| CDX87758 | Canola | endoplasmic reticulum | 32.15 | 47.11 |
| CDX69132 | Canola | plastid | 35.31 | 47.11 |
| CDY63262 | Canola | extracellular, plasma membrane, vacuole | 22.88 | 46.77 |
| CDY25281 | Canola | extracellular | 34.12 | 46.63 |
| CDY02431 | Canola | nucleus | 41.22 | 46.55 |
| CDX93470 | Canola | plasma membrane | 40.63 | 46.5 |
| CDY37617 | Canola | endoplasmic reticulum, extracellular | 33.92 | 46.49 |
| CDX94938 | Canola | extracellular, vacuole | 40.43 | 46.38 |
| CDY39575 | Canola | endoplasmic reticulum | 33.53 | 46.2 |
| CDX77621 | Canola | endoplasmic reticulum, extracellular | 31.16 | 46.06 |
| CDY25283 | Canola | vacuole | 33.73 | 45.84 |
| CDY16132 | Canola | endoplasmic reticulum, extracellular, vacuole | 33.33 | 44.59 |
| CDY31498 | Canola | cytosol | 24.46 | 41.47 |
Protein Annotations
| Gene3D:3.10.20.500 | Gene3D:3.90.70.10 | MapMan:50.3.4 | GO:A0A078EDV2 | EnsemblPlants:CDX99227 | ProteinID:CDX99227 |
| ProteinID:CDX99227.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006508 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008234 | GO:GO:0016787 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00107437001 | InterPro:Granulin | InterPro:Granulin_sf |
| InterPro:IPR037277 | PFAM:PF00112 | PFAM:PF00396 | PFAM:PF08246 | PRINTS:PR00705 | ScanProsite:PS00139 |
| ScanProsite:PS00639 | ScanProsite:PS00640 | PANTHER:PTHR12411 | PANTHER:PTHR12411:SF523 | InterPro:Papain_like_cys_pep_sf | InterPro:Pept_asp_AS |
| InterPro:Pept_cys_AS | InterPro:Pept_his_AS | InterPro:Peptidase_C1A | InterPro:Peptidase_C1A_C | InterPro:Prot_inhib_I29 | SMART:SM00277 |
| SMART:SM00645 | SMART:SM00848 | SUPFAM:SSF54001 | SUPFAM:SSF57277 | SignalP:SignalP-noTM | UniParc:UPI0004EF3998 |
| SEG:seg | : | : | : | : | : |
Description
BnaC05g33420D
Coordinates
chrLK031909:-:360789..363500
Molecular Weight (calculated)
55322.2 Da
IEP (calculated)
5.255
GRAVY (calculated)
-0.343
Length
507 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTPIKFTTL ALVTLSVLLA SSSLDVVTAK VDHRNPEEVK MFERWLVENH KNYNGLGEKD KRFEIFMDNV KFVQEHNSVP NQSYELGLTR FADLTNEEFR
101: AIYLRSKMER TRDSVKSERY LHNVGDTLPD EIDWRAKGAV VPVKDQGSCG SCWAFSAIGA VEGINQIKTG ELVSLSEQEL VDCDTSYNNG CGGGLMDYAF
201: QFIISNGGID TEEDYPYTAT DDNICNTDKK NTRVVTIDGY EDVPENENSL KKALANQPIS VAIEAGGRAF QLYKSGVFTG TCGTALDHGV VAVGYGTSEG
301: QDYWIIRNSW GSNWGESGYI KLQRNIKDSS GKCGVAMMAS YPTKSSGSNP PKPPPPAPVV CDKSYTCPAK STCCCLYEYK GKCYSWGCCP LESATCCEDG
401: SSCCPQAYPV CDLKAGTCRM KADSPLSVKA LTRGPATATT KATNVLDVPI DDEMSLRKAV AHQPASVAIE ASSQAFQLYK SGVLTGTCGR ISLDDWCGSR
501: GIWIIKR
101: AIYLRSKMER TRDSVKSERY LHNVGDTLPD EIDWRAKGAV VPVKDQGSCG SCWAFSAIGA VEGINQIKTG ELVSLSEQEL VDCDTSYNNG CGGGLMDYAF
201: QFIISNGGID TEEDYPYTAT DDNICNTDKK NTRVVTIDGY EDVPENENSL KKALANQPIS VAIEAGGRAF QLYKSGVFTG TCGTALDHGV VAVGYGTSEG
301: QDYWIIRNSW GSNWGESGYI KLQRNIKDSS GKCGVAMMAS YPTKSSGSNP PKPPPPAPVV CDKSYTCPAK STCCCLYEYK GKCYSWGCCP LESATCCEDG
401: SSCCPQAYPV CDLKAGTCRM KADSPLSVKA LTRGPATATT KATNVLDVPI DDEMSLRKAV AHQPASVAIE ASSQAFQLYK SGVLTGTCGR ISLDDWCGSR
501: GIWIIKR
001: MATSIKSITL ALLIFSVLLI SLSLGSVTAT ETTRNEAEAR RMYERWLVEN RKNYNGLGEK ERRFEIFKDN LKFVEEHSSI PNRTYEVGLT RFADLTNDEF
101: RAIYLRSKME RTRVPVKGEK YLYKVGDSLP DAIDWRAKGA VNPVKDQGSC GSCWAFSAIG AVEGINQIKT GELISLSEQE LVDCDTSYND GCGGGLMDYA
201: FKFIIENGGI DTEEDYPYIA TDVNVCNSDK KNTRVVTIDG YEDVPQNDEK SLKKALANQP ISVAIEAGGR AFQLYTSGVF TGTCGTSLDH GVVAVGYGSE
301: GGQDYWIVRN SWGSNWGESG YFKLERNIKE SSGKCGVAMM ASYPTKSSGS NPPKPPAPSP VVCDKSNTCP AKSTCCCLYE YNGKCYSWGC CPYESATCCD
401: DGSSCCPQSY PVCDLKANTC RMKGNSPLSI KALTRGPAIA TTKSTNMLVG SA
101: RAIYLRSKME RTRVPVKGEK YLYKVGDSLP DAIDWRAKGA VNPVKDQGSC GSCWAFSAIG AVEGINQIKT GELISLSEQE LVDCDTSYND GCGGGLMDYA
201: FKFIIENGGI DTEEDYPYIA TDVNVCNSDK KNTRVVTIDG YEDVPQNDEK SLKKALANQP ISVAIEAGGR AFQLYTSGVF TGTCGTSLDH GVVAVGYGSE
301: GGQDYWIVRN SWGSNWGESG YFKLERNIKE SSGKCGVAMM ASYPTKSSGS NPPKPPAPSP VVCDKSNTCP AKSTCCCLYE YNGKCYSWGC CPYESATCCD
401: DGSSCCPQSY PVCDLKANTC RMKGNSPLSI KALTRGPAIA TTKSTNMLVG SA
Arabidopsis Description
RD21CProbable cysteine protease RD21C [Source:UniProtKB/Swiss-Prot;Acc:Q9LT78]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.