Subcellular Localization
min:
: max
Winner_takes_all: vacuole
Predictor Summary:
Predictor Summary:
- nucleus 1
- vacuole 8
- extracellular 4
- golgi 5
- plasma membrane 4
- endoplasmic reticulum 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra033146.1-P | Field mustard | vacuole | 100.0 | 100.0 |
| AT4G11310.1 | Thale cress | endoplasmic reticulum | 82.31 | 84.34 |
| AT4G11320.1 | Thale cress | endoplasmic reticulum | 82.84 | 83.29 |
| CDY25281 | Canola | extracellular | 82.57 | 83.02 |
| CDY37617 | Canola | endoplasmic reticulum, extracellular | 81.77 | 82.43 |
| CDY16132 | Canola | endoplasmic reticulum, extracellular, vacuole | 81.77 | 80.47 |
| CDY17193 | Canola | endoplasmic reticulum | 43.16 | 50.63 |
| CDY63262 | Canola | extracellular, plasma membrane, vacuole | 33.24 | 50.0 |
| CDY39574 | Canola | cytosol, endoplasmic reticulum, nucleus | 39.41 | 50.0 |
| CDY01351 | Canola | endoplasmic reticulum | 45.04 | 47.86 |
| CDY31861 | Canola | endoplasmic reticulum | 45.04 | 47.59 |
| CDY33651 | Canola | endoplasmic reticulum | 41.02 | 46.93 |
| CDX96617 | Canola | endoplasmic reticulum | 41.02 | 46.79 |
| CDY22445 | Canola | vacuole | 46.11 | 45.99 |
| CDX69285 | Canola | endoplasmic reticulum, vacuole | 46.11 | 45.99 |
| CDX75633 | Canola | vacuole | 46.11 | 45.99 |
| KXG20680 | Sorghum | endoplasmic reticulum, extracellular, vacuole | 43.43 | 45.25 |
| CDX75496 | Canola | endoplasmic reticulum | 42.9 | 44.94 |
| CDY44047 | Canola | vacuole | 46.11 | 44.79 |
| CDY48168 | Canola | endoplasmic reticulum | 42.9 | 44.57 |
| CDY22370 | Canola | extracellular | 53.08 | 43.04 |
| CDX71540 | Canola | extracellular | 53.08 | 43.04 |
| CDY17093 | Canola | endoplasmic reticulum | 52.55 | 42.89 |
| CDY58055 | Canola | golgi, nucleus, plastid | 37.0 | 42.86 |
| CDY25228 | Canola | extracellular | 52.55 | 42.61 |
| CDY06760 | Canola | endoplasmic reticulum | 51.74 | 42.23 |
| EER88857 | Sorghum | endoplasmic reticulum | 41.82 | 41.94 |
| CDX69132 | Canola | plastid | 42.63 | 41.84 |
| CDY17044 | Canola | endoplasmic reticulum | 51.47 | 41.83 |
| CDX83168 | Canola | endoplasmic reticulum | 40.48 | 41.83 |
| CDY34045 | Canola | endoplasmic reticulum | 40.21 | 41.55 |
| CDY63586 | Canola | endoplasmic reticulum | 50.94 | 41.39 |
| CDX77621 | Canola | endoplasmic reticulum, extracellular | 37.53 | 40.82 |
| CDY39575 | Canola | endoplasmic reticulum | 39.68 | 40.22 |
| EER88858 | Sorghum | golgi, vacuole | 42.63 | 40.05 |
| CDY50483 | Canola | endoplasmic reticulum | 37.0 | 39.88 |
| CDX87758 | Canola | endoplasmic reticulum | 37.0 | 39.88 |
| Zm00001d036542_P001 | Maize | endoplasmic reticulum, golgi | 42.63 | 39.16 |
| CDY31498 | Canola | cytosol | 30.56 | 38.13 |
| CDY46179 | Canola | endoplasmic reticulum | 45.84 | 38.0 |
| CDX95457 | Canola | endoplasmic reticulum, extracellular, vacuole | 45.58 | 37.86 |
| CDY50157 | Canola | endoplasmic reticulum, extracellular, vacuole | 45.31 | 37.64 |
| CDY50154 | Canola | endoplasmic reticulum | 43.43 | 36.82 |
| CDX95451 | Canola | endoplasmic reticulum, extracellular, vacuole | 43.43 | 36.82 |
| Zm00001d036541_P002 | Maize | extracellular, plasma membrane | 45.31 | 35.06 |
| CDX93470 | Canola | plasma membrane | 41.29 | 34.76 |
| CDX94938 | Canola | extracellular, vacuole | 41.02 | 34.62 |
| CDX99227 | Canola | endoplasmic reticulum | 45.84 | 33.73 |
| CDY27951 | Canola | endoplasmic reticulum | 39.95 | 32.46 |
| CDY02431 | Canola | nucleus | 35.12 | 29.18 |
Protein Annotations
| Gene3D:3.90.70.10 | MapMan:50.3.4 | GO:A0A078GL04 | UniProt:A0A078GL04 | EnsemblPlants:CDY25283 | ProteinID:CDY25283 |
| ProteinID:CDY25283.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006508 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008234 | GO:GO:0016787 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00029353001 | PFAM:PF00112 | PFAM:PF08246 |
| PRINTS:PR00705 | ScanProsite:PS00639 | ScanProsite:PS00640 | PFscan:PS51257 | PANTHER:PTHR12411 | PANTHER:PTHR12411:SF526 |
| InterPro:Papain_like_cys_pep_sf | InterPro:Pept_asp_AS | InterPro:Pept_his_AS | InterPro:Peptidase_C1A | InterPro:Peptidase_C1A_C | InterPro:Prot_inhib_I29 |
| SMART:SM00645 | SMART:SM00848 | SUPFAM:SSF54001 | SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI00025455B9 |
| SEG:seg | : | : | : | : | : |
Description
BnaA02g21730DBnaA02g21730D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GL04]
Coordinates
chrLK032172:-:496517..500207
Molecular Weight (calculated)
41372.1 Da
IEP (calculated)
7.946
GRAVY (calculated)
-0.336
Length
373 amino acids
Sequence
(BLAST)
(BLAST)
001: MRMRSAKSAI LILLVAMVII SCVTAMDMSV VSYDDNHHVT AGPGRRQSIF DGEAELIFDS WIVKHAKAYN SVAEKERRLT IFKDNLRFIT NRNAENLSYR
101: LGLTRFADLS LREYKEVCHG ADPGPPKNHF IMTSSDRYKT SVGDVLPKSV DWRKKGAVTE IKYQGDCRSC WAFSTVGAVE SLNKIVTGEL VTLSEQDLIN
201: CNKENNGCGG GKVETAYEFI VENGGLRTNS DYPYKAVNGV CDASLKANNK NVMIDGYENL LANDEHALRK AVAHQPVTAV IDSSSREFQL YESGVFDGTC
301: GTNLNHGVVV VGYGTEKGRD YWIVRNSWGN TWGEAGYMKM ARNTADPRGF CGIAMRASYP LRNSFSTDIR SMA
101: LGLTRFADLS LREYKEVCHG ADPGPPKNHF IMTSSDRYKT SVGDVLPKSV DWRKKGAVTE IKYQGDCRSC WAFSTVGAVE SLNKIVTGEL VTLSEQDLIN
201: CNKENNGCGG GKVETAYEFI VENGGLRTNS DYPYKAVNGV CDASLKANNK NVMIDGYENL LANDEHALRK AVAHQPVTAV IDSSSREFQL YESGVFDGTC
301: GTNLNHGVVV VGYGTEKGRD YWIVRNSWGN TWGEAGYMKM ARNTADPRGF CGIAMRASYP LRNSFSTDIR SMA
001: MGYAKSAMLI FLLALVIASC ATAMDMSVVS SNDNHHVTAG PGRRQGIFDA EATLMFESWM VKHGKVYDSV AEKERRLTIF EDNLRFITNR NAENLSYRLG
101: LNRFADLSLH EYGEICHGAD PRPPRNHVFM TSSNRYKTSD GDVLPKSVDW RNEGAVTEVK DQGLCRSCWA FSTVGAVEGL NKIVTGELVT LSEQDLINCN
201: KENNGCGGGK VETAYEFIMN NGGLGTDNDY PYKALNGVCE GRLKEDNKNV MIDGYENLPA NDEAALMKAV AHQPVTAVVD SSSREFQLYE SGVFDGTCGT
301: NLNHGVVVVG YGTENGRDYW IVKNSRGDTW GEAGYMKMAR NIANPRGLCG IAMRASYPLK NSFSTDKVSV A
101: LNRFADLSLH EYGEICHGAD PRPPRNHVFM TSSNRYKTSD GDVLPKSVDW RNEGAVTEVK DQGLCRSCWA FSTVGAVEGL NKIVTGELVT LSEQDLINCN
201: KENNGCGGGK VETAYEFIMN NGGLGTDNDY PYKALNGVCE GRLKEDNKNV MIDGYENLPA NDEAALMKAV AHQPVTAVVD SSSREFQLYE SGVFDGTCGT
301: NLNHGVVVVG YGTENGRDYW IVKNSRGDTW GEAGYMKMAR NIANPRGLCG IAMRASYPLK NSFSTDKVSV A
Arabidopsis Description
RDL5Probable cysteine protease RDL5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUS9]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.