Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 7
- golgi 5
- extracellular 6
- vacuole 4
- plasma membrane 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT4G11320.1 | Thale cress | endoplasmic reticulum | 90.11 | 88.41 |
| CDY37617 | Canola | endoplasmic reticulum, extracellular | 85.71 | 84.32 |
| Bra033148.1-P | Field mustard | extracellular | 85.71 | 84.1 |
| CDY25281 | Canola | extracellular | 85.71 | 84.1 |
| Bra033146.1-P | Field mustard | vacuole | 84.34 | 82.31 |
| CDY25283 | Canola | vacuole | 84.34 | 82.31 |
| CDY16132 | Canola | endoplasmic reticulum, extracellular, vacuole | 84.62 | 81.27 |
| Bra024736.1-P | Field mustard | endoplasmic reticulum, extracellular | 82.69 | 80.91 |
| AT4G23520.1 | Thale cress | endoplasmic reticulum | 53.02 | 54.21 |
| AT1G20850.1 | Thale cress | endoplasmic reticulum | 45.33 | 46.35 |
| AT4G35350.1 | Thale cress | endoplasmic reticulum | 45.05 | 46.2 |
| AT3G19400.1 | Thale cress | endoplasmic reticulum, vacuole | 45.88 | 46.13 |
| KXG20680 | Sorghum | endoplasmic reticulum, extracellular, vacuole | 45.05 | 45.81 |
| AT4G36880.1 | Thale cress | vacuole | 46.98 | 45.48 |
| AT3G48340.1 | Thale cress | endoplasmic reticulum, extracellular | 44.51 | 44.88 |
| EER88857 | Sorghum | endoplasmic reticulum | 43.96 | 43.01 |
| AT5G43060.1 | Thale cress | endoplasmic reticulum | 54.12 | 42.55 |
| AT5G50260.1 | Thale cress | endoplasmic reticulum | 42.03 | 42.38 |
| AT1G47128.1 | Thale cress | endoplasmic reticulum | 53.3 | 41.99 |
| EER88858 | Sorghum | golgi, vacuole | 44.78 | 41.06 |
| AT3G48350.1 | Thale cress | endoplasmic reticulum | 40.66 | 40.66 |
| AT5G45890.1 | Thale cress | endoplasmic reticulum, golgi | 38.19 | 40.17 |
| Zm00001d036542_P001 | Maize | endoplasmic reticulum, golgi | 44.51 | 39.9 |
| AT3G19390.1 | Thale cress | endoplasmic reticulum | 45.33 | 36.5 |
| AT1G09850.1 | Thale cress | endoplasmic reticulum | 43.13 | 35.93 |
| Zm00001d036541_P002 | Maize | extracellular, plasma membrane | 46.7 | 35.27 |
Protein Annotations
| Gene3D:3.90.70.10 | MapMan:50.3.4 | EntrezGene:826733 | ProteinID:AEE82995.1 | ArrayExpress:AT4G11310 | EnsemblPlantsGene:AT4G11310 |
| RefSeq:AT4G11310 | TAIR:AT4G11310 | RefSeq:AT4G11310-TAIR-G | EnsemblPlants:AT4G11310.1 | TAIR:AT4G11310.1 | EMBL:AY093066 |
| Unigene:At.43189 | EMBL:BT000099 | ProteinID:CAB51415.1 | ProteinID:CAB81232.1 | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0004197 | GO:GO:0005575 | GO:GO:0005576 | GO:GO:0005615 | GO:GO:0005618 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005764 | GO:GO:0005773 | GO:GO:0006508 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008233 | GO:GO:0008234 | GO:GO:0009056 | GO:GO:0009987 |
| GO:GO:0016787 | GO:GO:0019538 | GO:GO:0030312 | GO:GO:0051603 | MEROPS:I29.003 | RefSeq:NP_567376.1 |
| PFAM:PF00112 | PFAM:PF08246 | PRINTS:PR00705 | ScanProsite:PS00639 | PFscan:PS51257 | PANTHER:PTHR12411 |
| PANTHER:PTHR12411:SF526 | InterPro:Papain_like_cys_pep_sf | InterPro:Pept_his_AS | InterPro:Peptidase_C1A | InterPro:Peptidase_C1A_C | InterPro:Prot_inhib_I29 |
| UniProt:Q9SUT0 | SMART:SM00645 | SMART:SM00848 | SUPFAM:SSF54001 | SignalP:SignalP-noTM | TMHMM:TMhelix |
| UniParc:UPI00000A090A | EMBL:Z37253 | SEG:seg | : | : | : |
Description
RDL4Probable cysteine protease RDL4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUT0]
Coordinates
chr4:+:6883513..6885517
Molecular Weight (calculated)
39927.1 Da
IEP (calculated)
5.888
GRAVY (calculated)
-0.326
Length
364 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSAKSAMLI LLVAMVIASC ATAIDMSVVS YDDNNRLHSV FDAEASLIFE SWMVKHGKVY GSVAEKERRL TIFEDNLRFI NNRNAENLSY RLGLTGFADL
101: SLHEYKEVCH GADPRPPRNH VFMTSSDRYK TSADDVLPKS VDWRNEGAVT EVKDQGHCRS CWAFSTVGAV EGLNKIVTGE LVTLSEQDLI NCNKENNGCG
201: GGKLETAYEF IMKNGGLGTD NDYPYKAVNG VCDGRLKENN KNVMIDGYEN LPANDESALM KAVAHQPVTA VIDSSSREFQ LYESGVFDGS CGTNLNHGVV
301: VVGYGTENGR DYWLVKNSRG ITWGEAGYMK MARNIANPRG LCGIAMRASY PLKNSFSTDK SSIA
101: SLHEYKEVCH GADPRPPRNH VFMTSSDRYK TSADDVLPKS VDWRNEGAVT EVKDQGHCRS CWAFSTVGAV EGLNKIVTGE LVTLSEQDLI NCNKENNGCG
201: GGKLETAYEF IMKNGGLGTD NDYPYKAVNG VCDGRLKENN KNVMIDGYEN LPANDESALM KAVAHQPVTA VIDSSSREFQ LYESGVFDGS CGTNLNHGVV
301: VVGYGTENGR DYWLVKNSRG ITWGEAGYMK MARNIANPRG LCGIAMRASY PLKNSFSTDK SSIA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.