Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular
Predictor Summary:
Predictor Summary:
- nucleus 2
- extracellular 5
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 4
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY25281 | Canola | extracellular | 97.3 | 97.03 |
| AT4G11310.1 | Thale cress | endoplasmic reticulum | 84.32 | 85.71 |
| AT4G11320.1 | Thale cress | endoplasmic reticulum | 84.59 | 84.37 |
| CDY25283 | Canola | vacuole | 82.43 | 81.77 |
| CDY16132 | Canola | endoplasmic reticulum, extracellular, vacuole | 82.16 | 80.21 |
| CDY17193 | Canola | endoplasmic reticulum | 44.05 | 51.26 |
| CDY63262 | Canola | extracellular, plasma membrane, vacuole | 32.43 | 48.39 |
| CDY39574 | Canola | cytosol, endoplasmic reticulum, nucleus | 38.11 | 47.96 |
| CDY01351 | Canola | endoplasmic reticulum | 44.59 | 47.01 |
| CDY31861 | Canola | endoplasmic reticulum | 44.32 | 46.46 |
| CDY33651 | Canola | endoplasmic reticulum | 40.81 | 46.32 |
| CDX96617 | Canola | endoplasmic reticulum | 40.81 | 46.18 |
| KXG20680 | Sorghum | endoplasmic reticulum, extracellular, vacuole | 44.05 | 45.53 |
| CDX75496 | Canola | endoplasmic reticulum | 43.78 | 45.51 |
| CDY22445 | Canola | vacuole | 45.95 | 45.45 |
| CDX75633 | Canola | vacuole | 45.95 | 45.45 |
| CDX69285 | Canola | endoplasmic reticulum, vacuole | 45.95 | 45.45 |
| CDY58055 | Canola | golgi, nucleus, plastid | 38.38 | 44.1 |
| CDY44047 | Canola | vacuole | 45.41 | 43.75 |
| CDY17093 | Canola | endoplasmic reticulum | 53.24 | 43.11 |
| CDX71540 | Canola | extracellular | 53.51 | 43.04 |
| CDY22370 | Canola | extracellular | 53.51 | 43.04 |
| EER88857 | Sorghum | endoplasmic reticulum | 43.24 | 43.01 |
| CDY25228 | Canola | extracellular | 52.97 | 42.61 |
| CDX69132 | Canola | plastid | 43.51 | 42.37 |
| CDY48168 | Canola | endoplasmic reticulum | 41.08 | 42.34 |
| CDY17044 | Canola | endoplasmic reticulum | 52.43 | 42.27 |
| CDY06760 | Canola | endoplasmic reticulum | 52.16 | 42.23 |
| CDY63586 | Canola | endoplasmic reticulum | 52.16 | 42.05 |
| CDX77621 | Canola | endoplasmic reticulum, extracellular | 38.38 | 41.4 |
| CDX83168 | Canola | endoplasmic reticulum | 40.27 | 41.27 |
| CDY34045 | Canola | endoplasmic reticulum | 40.0 | 41.0 |
| CDY39575 | Canola | endoplasmic reticulum | 40.27 | 40.49 |
| EER88858 | Sorghum | golgi, vacuole | 43.24 | 40.3 |
| CDX87758 | Canola | endoplasmic reticulum | 36.76 | 39.31 |
| CDY50483 | Canola | endoplasmic reticulum | 36.76 | 39.31 |
| Zm00001d036542_P001 | Maize | endoplasmic reticulum, golgi | 42.97 | 39.16 |
| CDY31498 | Canola | cytosol | 31.08 | 38.46 |
| CDY46179 | Canola | endoplasmic reticulum | 46.49 | 38.22 |
| CDY50157 | Canola | endoplasmic reticulum, extracellular, vacuole | 46.22 | 38.08 |
| CDX95457 | Canola | endoplasmic reticulum, extracellular, vacuole | 45.95 | 37.86 |
| CDY50154 | Canola | endoplasmic reticulum | 44.32 | 37.27 |
| CDX95451 | Canola | endoplasmic reticulum, extracellular, vacuole | 44.05 | 37.05 |
| Zm00001d036541_P002 | Maize | extracellular, plasma membrane | 45.95 | 35.27 |
| CDX93470 | Canola | plasma membrane | 41.62 | 34.76 |
| CDX94938 | Canola | extracellular, vacuole | 41.35 | 34.62 |
| CDX99227 | Canola | endoplasmic reticulum | 46.49 | 33.92 |
| CDY27951 | Canola | endoplasmic reticulum | 41.35 | 33.33 |
| CDY02431 | Canola | nucleus | 36.49 | 30.07 |
Protein Annotations
| Gene3D:3.90.70.10 | MapMan:50.3.4 | GO:A0A078HIG0 | UniProt:A0A078HIG0 | EnsemblPlants:CDY37617 | ProteinID:CDY37617 |
| ProteinID:CDY37617.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006508 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008234 | GO:GO:0016787 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00064254001 | PFAM:PF00112 | PFAM:PF08246 |
| PRINTS:PR00705 | ScanProsite:PS00639 | ScanProsite:PS00640 | PFscan:PS51257 | PANTHER:PTHR12411 | PANTHER:PTHR12411:SF526 |
| InterPro:Papain_like_cys_pep_sf | InterPro:Pept_asp_AS | InterPro:Pept_his_AS | InterPro:Peptidase_C1A | InterPro:Peptidase_C1A_C | InterPro:Prot_inhib_I29 |
| SMART:SM00645 | SMART:SM00848 | SUPFAM:SSF54001 | SignalP:SignalP-noTM | UniParc:UPI0004EB1072 | SEG:seg |
Description
BnaCnng08320DBnaCnng08320D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HIG0]
Coordinates
chrLK032404:+:3425..5292
Molecular Weight (calculated)
40468.6 Da
IEP (calculated)
5.425
GRAVY (calculated)
-0.333
Length
370 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSPKSATLI FLVSMGIASC AMAMDMSVSS DDNHHVIAAL GCRNSGFDAE ASLIFESWMV EHGKVYESVA EKERRLTIFE DNLRFITNRN AENLGYRLGL
101: TRFADLSLHE YGQVCHGADP RPPKDHVFMT SSNRYKTSAG DVLPESVDWR KEGAVTKVKD QGHCRSCWAF STVGAVEGLN KIVTGQLVTL SEQDLINCNK
201: ENNGCEGGKV ETAYEYIVTN GGLGTNNDYP YKAVNGVCDG GLKENNKNVM IDGYESLPSN DELSLMKAVA HQPVTAVIDS SSREFQLYES GVFDGTCGTN
301: LNHGVVVVGY GTENGRDYWI VRNSWGNTWG EAGYMKMARN IANPRGLCGI AMRAAYPLKN SVSDDIRSMA
101: TRFADLSLHE YGQVCHGADP RPPKDHVFMT SSNRYKTSAG DVLPESVDWR KEGAVTKVKD QGHCRSCWAF STVGAVEGLN KIVTGQLVTL SEQDLINCNK
201: ENNGCEGGKV ETAYEYIVTN GGLGTNNDYP YKAVNGVCDG GLKENNKNVM IDGYESLPSN DELSLMKAVA HQPVTAVIDS SSREFQLYES GVFDGTCGTN
301: LNHGVVVVGY GTENGRDYWI VRNSWGNTWG EAGYMKMARN IANPRGLCGI AMRAAYPLKN SVSDDIRSMA
001: MGYAKSAMLI FLLALVIASC ATAMDMSVVS SNDNHHVTAG PGRRQGIFDA EATLMFESWM VKHGKVYDSV AEKERRLTIF EDNLRFITNR NAENLSYRLG
101: LNRFADLSLH EYGEICHGAD PRPPRNHVFM TSSNRYKTSD GDVLPKSVDW RNEGAVTEVK DQGLCRSCWA FSTVGAVEGL NKIVTGELVT LSEQDLINCN
201: KENNGCGGGK VETAYEFIMN NGGLGTDNDY PYKALNGVCE GRLKEDNKNV MIDGYENLPA NDEAALMKAV AHQPVTAVVD SSSREFQLYE SGVFDGTCGT
301: NLNHGVVVVG YGTENGRDYW IVKNSRGDTW GEAGYMKMAR NIANPRGLCG IAMRASYPLK NSFSTDKVSV A
101: LNRFADLSLH EYGEICHGAD PRPPRNHVFM TSSNRYKTSD GDVLPKSVDW RNEGAVTEVK DQGLCRSCWA FSTVGAVEGL NKIVTGELVT LSEQDLINCN
201: KENNGCGGGK VETAYEFIMN NGGLGTDNDY PYKALNGVCE GRLKEDNKNV MIDGYENLPA NDEAALMKAV AHQPVTAVVD SSSREFQLYE SGVFDGTCGT
301: NLNHGVVVVG YGTENGRDYW IVKNSRGDTW GEAGYMKMAR NIANPRGLCG IAMRASYPLK NSFSTDKVSV A
Arabidopsis Description
RDL5Probable cysteine protease RDL5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUS9]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.